Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq5136 122 7e-23 seq5134 96.9 3e-15 seq4121 95.1 1e-14 >seq5136 Length=173398 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || ||||| | |||||||| || |||||||||||||| Sbjct 116344 ATTCCACCACGGAGACGGAGGACCAAATGGAGGGTAGATTCCTTCTGAATGTTGTAATCA 116403 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||||||||| || || ||||| |||| | |||||| || || ||| Sbjct 116404 GAAAGAGTGCGCCCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGA 116463 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| || || ||||| | |||| ||||||| | ||| Sbjct 116464 GGAATTCCCTCCTTGTCTTGGATTTTGGCTTTTACATTCTCAATTGTGTCGGATGGCTCG 116523 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || ||||| ||||| || || ||||| |||||||| Sbjct 116524 ACTTCCAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 116573 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || ||||| | ||||| || || || |||||||||||| Sbjct 115888 ATTCCTCCACGAAGACGGAGGACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCG 115947 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || || || |||||||| |||||| ||||||||||||| || || ||| Sbjct 115948 GACAGGGTGCGTCCGTCCTCCAGTTGTTTGCCAGCGAAGATGAGACGCTGCTGATCTGGA 116007 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| |||| | || | |||||||| | ||| Sbjct 116008 GGGATTCCCTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCGGATGGCTCG 116067 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || ||||||| ||| || || || |||||||| Sbjct 116068 ACTTCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 116117 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || ||||| | || ||||| || || |||||||| || Sbjct 115432 ATACCACCACGAAGACGCAACACCAAATGCAAAGTCGATTCCTTCTGGATGTTGTAGTCA 115491 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||| ||||| || || |||||| | ||||||||||| || || || Sbjct 115492 GAAAGAGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGG 115551 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| || || || | | |||| || || | || ||| Sbjct 115552 GGGATTCCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCAATCGTATCAGAGGGCTCG 115611 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||||||||| || || || || || |||||||| Sbjct 115612 ACCTCCAGGGTGATTGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 115661 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || |||||| || || ||||| || || Sbjct 115009 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCCAGTTGCTTTCCG 115068 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| || || || ||||| || || || || ||||| ||| Sbjct 115069 GCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTT 115128 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| | ||||| |||| ||| | ||||| ||||||| ||| Sbjct 115129 ACATTCTCGATGGTGTCGGATGGCTCGACTTCCAGGGTGATGGTTTTTCCGGTCAAAGTC 115188 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || || |||||| || Sbjct 115189 TTCACGAAGATTTGCATGCCT 115209 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | |||||||| | || || || || ||||||||||| || Sbjct 116572 ATACCACCGCGCAGACGGAGGACTAAATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCA 116631 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || || || |||||||| || ||| |||| | ||||| || || || Sbjct 116632 GAAAGAGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGG 116691 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| || || || | | ||||| |||||| | | || Sbjct 116692 GGAATTCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTTTCAATGGTGTCTGAAGGCTCA 116751 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || |||| ||| | |||||||| || || || || ||||| ||||||||| || Sbjct 116752 ACCTCCAGGGTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGCCT 116805 >seq5134 Length=897107 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | || || || || | || || || || |||||||| || || Sbjct 635934 ACCACCACGCAGGCGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGA 635875 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || |||||| || || || |||||| |||| |||||||| || || ||||| Sbjct 635874 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 635815 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||||||||| |||||| ||| | | ||| | || || | | |||||| Sbjct 635814 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGAC 635755 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || ||||| || || || || || || |||||||| Sbjct 635754 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 635707 >seq4121 Length=254077 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || ||||| ||||| |||||| | ||| || |||||| || || || || Sbjct 189753 GTTGACTCCTTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCCAGCTGCTTGCCG 189812 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | |||||| || || || || || || || ||||| ||||| || Sbjct 189813 GCGAAGATCAAACGCTGCTGATCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTC 189872 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| |||| || |||||| || | ||| | || || ||||||||||| Sbjct 189873 ACGTTCTCAATGGTATCGGAGGGTTCGACCTCAAGGGTAATGGTCTTTCCGGTCAGAGTC 189932 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 189933 TTCACGAAGATCTGCAT 189949 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || || || || | || || || || || ||||| |||||| Sbjct 189264 ATGCCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCG 189323 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || || || || || || |||||| |||| |||||||| || || ||| Sbjct 189324 GACAAGGTGCGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGA 189383 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | |||| ||| |||| || || Sbjct 189384 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAGGGCTCA 189443 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || ||||||||||| || || || |||||||| Sbjct 189444 ACCTCAAGGGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 189493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420105044815596