Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5134 495 7e-135 seq5516 352 5e-92 >seq5134 Length=897107 Score = 495 bits (548), Expect = 7e-135 Identities = 1245/1866 (67%), Gaps = 76/1866 (4%) Strand=Plus/Plus Query 243766 CTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCAT 243825 ||| || | |||||| ||||| || || ||||| ||| ||||| | | ||| || Sbjct 539156 CTTTGTGCGCAGGTAATACATCCCTGTTTTGAGACCAGCTTTCCAGGAATAAAAGTGTAT 539215 Query 243826 GGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGA 243885 || ||||||||| || | | | || || || || ||| || | |||| || Sbjct 539216 GGACGTCAGCTT--TC--CGTAA--TTCGGCTCTGCC----ACATGAATA--TTGAACGA 539263 Query 243886 CTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCT--GA 243943 ||| |||||||| | ||| | |||| ||||||||||| | ||| | |||| || Sbjct 539264 CTGACTCTGGTCTATGAACGCACCCCGATCTGCGGCCATTTTAATGGTGGACTTCACCGA 539323 Query 243944 GATATCTCATACGCCGTCTTGTAGATGGGCTTGAGG-TGCTCGGGGAACCCTTCGATGTT 244002 ||| || || ||| |||||||| | | | || | || ||| | ||||| || Sbjct 539324 GATTTCCCACACG--GTCTTGTACA-GATCGCGAACCTTCTGGGGAATGGACTCGATATT 539380 Query 244003 CTGCACCGAGCCCTTG-TGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCA 244061 || | |||||| || | || ||||| |||| | ||||| |||| ||||| | ||| Sbjct 539381 TTGGATGGAGCCCCTGCTCGA-GATGATCTGGTTCTTCATGTCGTCGTCCCACAAGTCCA 539439 Query 244062 AGCGCTCC---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCA 244118 ||||| || || | || || ||| |||||||| ||||| || ||||||| Sbjct 539440 ---GCTCCGTTAGGTCCCTCAGCAAATGATGGTTAACCACCTGGAACTCGCCAGACAGCA 539496 Query 244119 CGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCT 244178 |||| | ||| | || || || ||||||| | || ||||||||| ||||| Sbjct 539497 CGCGCCTGGTGTAAATATTTGTGGTGTAGGGCTCGAAGGATTCGTTGTTGCCCATTATCT 539556 Query 244179 GCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCT 244238 | || || || || |||||||| | || ||||| ||||| || |||||| || Sbjct 539557 GAGCAGTAGAGGCCGTGGGCATGGGAGCGACAAGCAGGGAGTTCCGGACACCGTGCTGCT 539616 Query 244239 GGATGCGGAGTC--TGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAG 244296 |||| || || | || | | ||||||||||| || | |||| | Sbjct 539617 TGATG--GACTCCTTCAGTTTTTGCCAGTCCCACAGATTCGTTGGCTCCTTGT------- 539667 Query 244297 GCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTA 244356 |||||||||| ||||||| | |||||||| |||||||||||||||||||| ||| Sbjct 539668 --CCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCCTCGTAGGTTTCGTA 539725 Query 244357 GGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTC 244416 ||| || ||| ||| ||||| | ||||| | || |||||| |||||||||||||||| Sbjct 539726 GGGTCCTTCGATCTGCGCCAGTTCGCAGCTGGCTTCCAGGGCGCCGTAGTAGATGGTCTC 539785 Query 244417 GAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCAT 244476 ||| ||| || ||||| | || |||| ||| |||||| | ||| | || Sbjct 539786 GAATATCTGCTGGTTCAAGAGGCCTGCCTCCTCGCTTTCATAGGGGAATCGCATGAGAAT 539845 Query 244477 GAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536 | | |||| || | |||||| || |||||||| | || | || | | |||||| Sbjct 539846 CAGGGCGTCAGCGAATCCCTGAACACCGATGCCCACAGGGCGATGCCTCAAGTTGGACTT 539905 Query 244537 CATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGAT 244596 | | || || |||| ||| ||||||||| |||||| | ||||||||| || ||| | Sbjct 539906 CTTTGCCTCTGGCAGGGGATAAAAGTTGATGTCGATGATCTTGTTGAGATTTTTGGTCAC 539965 Query 244597 CATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGT 244656 | | | || || ||| || ||||| ||| | | ||||| || Sbjct 539966 CGTCTTGGTAACTTCCTTGAGCTTCTTGAAGTCATAC------GTCTTCTCGG-----GT 540014 Query 244657 GATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGA 244716 | | |||||| |||||||||| ||||| |||||||||||| | ||| || | Sbjct 540015 G----TGACAAACATATTGAGGGCGATCGAGGCCAAGTTGCAGACGGCAATCTCATCAGG 540070 Query 244717 GTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTG 244776 || ||||| ||| || |||||||| | ||| ||||||||||||||||| | | ||| Sbjct 540071 CGAGGAGTACTCGACGATTTCGGTGCACAAGTTGCTGCACTTGATGGTGCCGACATTCTG 540130 Query 244777 GTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAG 244836 || ||| ||| ||||||||| |||||| | |||||| |||| ||| || || | Sbjct 540131 CTGGTTGCTCTTCCGGTTGCAGGCATCCTTGAACAGCATGTAGGGGTTCCCAGTTTCCAC 540190 Query 244837 CTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCC 244896 ||| || | | || | | ||| ||| | |||||| ||||| | | || || Sbjct 540191 CTGAGCCTCAATGATGGCGAACCAAAGGGACTGAGCCTTCACCGTTCGGTTGGCACGACC 540250 Query 244897 CTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCC 244956 |||| |||||| ||||| |||||||| |||||| || |||| ||||| Sbjct 540251 CTCTTGCTCGTACTTCTCGTACAACCTTTCGAACTCATCGCCCCACACATCGTGAAGGCC 540310 Query 244957 GGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAA 245016 |||||| ||||||||||| ||| ||||| | ||| ||| | || ||| || Sbjct 540311 GGGGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCGACGCGCTTCATAAA 540370 Query 245017 GAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGT 245076 ||| ||||| ||||| ||||| | ||| || || | || | | ||| ||| ||| || Sbjct 540371 GAGATCGGGTATCCACAGGGCGTAGAACAGATCGCGGGCGCGGTTCTCCTCCTTGCCGGT 540430 Query 245077 GTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGC 245136 ||||||| |||| |||| || ||||||||||| |||||||||||||| ||| | || Sbjct 540431 GTTCTTCTTCAGTTCCAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCCAGGTAAATGGC 540490 Query 245137 GAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGAT 245196 | ||||||||| |||||| ||| ||||| ||||| | | | |||||||| Sbjct 540491 AAAGGCGCCGGGACGCTTGCCGCCGCCCTGATCCACATAACGTGCCACATTGTTGAAGAC 540550 Query 245197 GCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTT 245256 | ||| | || || | ||| || ||| |||||| ||||| || ||| |||||| Sbjct 540551 CCTCAGCATGGGAACGAGGCCATTGGAGGTGCCGTTCGTGCCGCAAATCGAGGTGCCCTT 540610 Query 245257 GCCCCTGAGGTTGCTGATGGACAT----GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGG 245312 ||| || ||| | ||||||| || | ||||| || ||| ||||| | || Sbjct 540611 CGCCC---GGATGCAG-TGGACATTTAGCCCGATGCCGCCAGCCGACTTCGAGATCATGG 540666 Query 245313 CGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAA 245372 |||| || | || | |||||||| ||| ||| | | ||||| |||| || | Sbjct 540667 CGCACTGCTCCACGGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTGAGGAGGA 540726 Query 245373 AGCAGGAGGACAGCTGGGGC---TTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGT 245429 | || ||||||||||| ||| || | | ||| | | || || ||||| || | Sbjct 540727 AACACGAGGACAGCTGCGGCCGATTCGTG--GCA-GCGGCAAAAAGTGTGGGCGACGCAT 540783 Query 245430 GGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGC 245489 |||| ||||| || ||| | || ||||| | | || ||||| | || | Sbjct 540784 GGGTGAAGTAACGCTCCGACAAGAGATTATACGTTTCCACGGCTGCATCGATATCCTCCC 540843 Query 245490 CGTGGATCTGCAGGGCGCAC-CTCATGAGGGTGTGCTG-GGGCGTCTCGATGGGTCCCT- 245546 |||| || | || ||| | ||| || ||||||| ||||| |||| | | | | Sbjct 540844 CGTGTATTCCGATCGC-CACGCGCATCAGCATGTGCTGCGGGCG-CTCG--GCGATCTTG 540899 Query 245547 -CGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCA 245605 || || ||| |||| ||||| || ||||| ||||||||||||||||| ||| ||| Sbjct 540900 CCGTTTCTCTTCAGCAAATAGGAACGTTCGAGGGTCTTGAACCCAAAGTAGTTGTACCCA 540959 Query 245606 AAGTCG 245611 |||||| Sbjct 540960 AAGTCG 540965 >seq5516 Length=367667 Score = 352 bits (390), Expect = 5e-92 Identities = 579/821 (71%), Gaps = 23/821 (3%) Strand=Plus/Minus Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394 |||||| | |||||| | || ||| |||||||| | ||| |||| ||| | |||| Sbjct 270503 CTGGACAGTGGAGGAGGTGGATCTGTCCAAGGACCTGACCGACTGG----CACCGCCTGA 270448 Query 42395 --GA--ACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCA 42450 || |||| ||| || || | |||||||||||||||||||| || |||| Sbjct 270447 AGGATGACGAGCGCCACTTCATCTCGCACGTGCTGGCCTTCTTCGCCGCCTCCGATGGCA 270388 Query 42451 TAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCT 42510 | || ||||||||||||| | | |||| | ||||| ||| | ||||| |||| Sbjct 270387 TCGTAAATGAGAACCTGGTCGAGCGCTTCAGCCAGGAGGTTCAGATCACGGAGGCACGCT 270328 Query 42511 GCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGC 42570 |||||||||||||||| || ||||| |||||||||||||| ||| ||||| ||| Sbjct 270327 GCTTCTACGGCTTCCAAATCGCCATGGAGAACGTGCACTCGGAGATGTACAGTGTGCTGA 270268 Query 42571 TCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGA 42630 || |||| ||||||| ||| || | |||| | |||||||| ||||| ||||||| Sbjct 270267 TCGACACATACATCCGGGACCCGCACCAGCGGGAATACCTGTTCAACGCCATCGAGACGA 270208 Query 42631 TGCC--CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCC-CGAC- 42686 |||| ||| | ||| |||||||||||||| || ||||||| ||| | | Sbjct 270207 TGCCGGCTG--TGAAGCGCAAGGCGGACTGGGCTCTTTCCTGGATC--TCCTCCAAGTCG 270152 Query 42687 GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGC 42746 || | ||||| ||| | | | ||||| | ||||||||||||||||||||| ||| Sbjct 270151 GCCAATTTCGGAGAGCGCATCATTGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGC 270092 Query 42747 GCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTC 42805 |||||||||||| |||||||| ||| || ||| | |||||| ||||| |||||||| Sbjct 270091 AGCTTCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCT-GATGCCGGGACTGACCTTCTC 270033 Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865 ||||| || ||| | | |||||||| || || | ||||||||| || ||||| Sbjct 270032 CAACGAGCTTATCTCCCGAGACGAGGGCCTTCACTGCGACTTTGCCGTGCTGATGTTCCA 269973 Query 42866 GAGCCACCTCAGGCA-CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCG 42924 | ||| | ||| | | ||| | ||||| || | |||||| || || | Sbjct 269972 G---CACTTGGTGCAGCGACCCCGC-CGCGAGCGCATCATTGAGATCATCCGAGATGCAG 269917 Query 42925 TGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACC 42984 ||| || || ||||||||||||| | | ||||||||| ||| |||||||||| Sbjct 269916 TGGCCATTGAACAGGAGTTCCTCACCGATGCCCTGCCCGTGAACCTCATCGGCATGAATT 269857 Query 42985 ACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTC 43044 ||| || |||| |||||||| ||| ||| || || | | ||| | |||| Sbjct 269856 GCGATCTGATGTCGCAGTACATCGAGTTCGTGGCGGATCGCTTGCTGGTGGAATTGGGCG 269797 Query 43045 TCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGG 43104 || || ||||||| ||| | ||||||| |||| ||||||| |||||| |||| | Sbjct 269796 TCGGCAAGATCTACAATACGAAGAACCCCTTCAACTTCATGGAGATGATCTCGCTGGACG 269737 Query 43105 GCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||||||| || |||||| || | ||| |||||| Sbjct 269736 GCAAGACCAACTTCTTTGAGAAGAAGGTGGGCGAGTACCAG 269696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944271526292080