Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq5503 100 3e-16 seq5134 100 3e-16 >seq5503 Length=77054 Score = 100 bits (110), Expect = 3e-16 Identities = 403/632 (64%), Gaps = 16/632 (3%) Strand=Plus/Plus Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTAG 20194 ||||||||||| || | ||| ||||||| || ||||| | ||| || |||| Sbjct 66294 GGAAAGGGACGCGGCTTACGCTCCAGCTGCTCTTTCAGGGGCTCCACATGATTTAGGTAG 66353 Query 20195 ATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCA 20254 | || | || |||| ||||| | ||| || || ||| | ||||| || ||||| || Sbjct 66354 ACATGCGTGTCGCCCATGGTGTGTACAAAGTCTCCTGGTTTTAGACCCGTCACATGGGCG 66413 Query 20255 AGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCT 20314 | ||| | || | |||| ||| ||| ||||| || || || |||| |||||||| Sbjct 66414 ATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCG 66473 Query 20315 CCCGACCTCTGATACAGCTGACAGGAAAGCTCACCG------TCAGCTACATAAAATTGA 20368 | || ||| |||||||| ||||| ||||| ||| | | || || || || Sbjct 66474 GCGCTCCGCTGGTACAGCTGGCAGGAGAGCTCGCCGCGCGTCTGTGAGACGTAGAACTGG 66533 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACAC 20428 | |||| || ||||| || |||||| | | |||| ||| ||||| || || Sbjct 66534 GCCAGGCAGTGGCACGGCGGCAGGGCCATCTTGGGTATGTCCAGCGGATTCCAGGCCGAC 66593 Query 20429 ATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGG 20488 || ||||| | || || |||||||| || || || | | | || ||| Sbjct 66594 ATGATGATGCGCCTGTCCGAGGGATTATTCTTGATAGTGTCGATCACCTGGCGCAGCTGG 66653 Query 20489 TCAAACCCCTGGCCTGTATAGTCAGCATC-CGCGTCCACGTACGCCGCCCCAAAGTGCCT 20547 || | |||| ||| | || | | || | || | ||||| ||||||| || || | Sbjct 66654 TCGATGCCCTTGCCGCTGTAATTGTCGTCGCAGGTGC-CGTACTCCGCCCCGAAATGACG 66712 Query 20548 CCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCC 20607 ||||||||| || || || || || | || ||| | | | || |||| || Sbjct 66713 CCACTGGAAGCCATACACCGGGCCGAGGTCGCCCACGGCGCGCTCCGTGTGGCCCAGCTT 66772 Query 20608 GGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCTTG----AAA 20663 | |||||||||||| || || || ||||| || | || ||||||| | Sbjct 66773 GTCCAGGAACTCCCGGGTGCTGTTCCCATCCCAGATATGAAC----GTTCTTGGCCTGCA 66828 Query 20664 GCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCC 20723 || | ||| ||| || || || |||||| |||||||| | | || | || Sbjct 66829 GCAGCTTGGCGTCCGTCTGGCCAGCCACAAACCAGAGCAGCTCCTCGGCCACCGCGCGGA 66888 Query 20724 AAAACACCCGCTTTGTGGTTAGTAAGGGAAAG 20755 | || || ||||| ||||| || | ||| ||| Sbjct 66889 AGAAGACGCGCTTGGTGGTCAGCAGGGGGAAG 66920 >seq5134 Length=897107 Score = 100 bits (110), Expect = 3e-16 Identities = 403/632 (64%), Gaps = 16/632 (3%) Strand=Plus/Minus Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTAG 20194 ||||||||||| || | ||| ||||||| || ||||| | ||| || |||| Sbjct 890954 GGAAAGGGACGCGGCTTACGCTCCAGCTGCTCTTTCAGGGGCTCCACATGATTTAGGTAG 890895 Query 20195 ATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCA 20254 | || | || |||| ||||| | ||| || || ||| | ||||| || ||||| || Sbjct 890894 ACATGCGTGTCGCCCATGGTGTGTACAAAGTCTCCTGGTTTTAGACCCGTCACATGGGCG 890835 Query 20255 AGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCT 20314 | ||| | || | |||| ||| ||| ||||| || || || |||| |||||||| Sbjct 890834 ATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCG 890775 Query 20315 CCCGACCTCTGATACAGCTGACAGGAAAGCTCACCG------TCAGCTACATAAAATTGA 20368 | || ||| |||||||| ||||| ||||| ||| | | || || || || Sbjct 890774 GCGCTCCGCTGGTACAGCTGGCAGGAGAGCTCGCCGCGCGTCTGTGAGACGTAGAACTGG 890715 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACAC 20428 | |||| || ||||| || |||||| | | |||| ||| ||||| || || Sbjct 890714 GCCAGGCAGTGGCACGGCGGCAGGGCCATCTTGGGTATGTCCAGCGGATTCCAGGCCGAC 890655 Query 20429 ATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGG 20488 || ||||| | || || |||||||| || || || | | | || ||| Sbjct 890654 ATGATGATGCGCCTGTCCGAGGGATTATTCTTGATAGTGTCGATCACCTGGCGCAGCTGG 890595 Query 20489 TCAAACCCCTGGCCTGTATAGTCAGCATC-CGCGTCCACGTACGCCGCCCCAAAGTGCCT 20547 || | |||| ||| | || | | || | || | ||||| ||||||| || || | Sbjct 890594 TCGATGCCCTTGCCGCTGTAATTGTCGTCGCAGGTGC-CGTACTCCGCCCCGAAATGACG 890536 Query 20548 CCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCC 20607 ||||||||| || || || || || | || ||| | | | || |||| || Sbjct 890535 CCACTGGAAGCCATACACCGGGCCGAGGTCGCCCACGGCGCGCTCCGTGTGGCCCAGCTT 890476 Query 20608 GGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCTTG----AAA 20663 | |||||||||||| || || || ||||| || | || ||||||| | Sbjct 890475 GTCCAGGAACTCCCGGGTGCTGTTCCCATCCCAGATATGAAC----GTTCTTGGCCTGCA 890420 Query 20664 GCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCC 20723 || | ||| ||| || || || |||||| |||||||| | | || | || Sbjct 890419 GCAGCTTGGCGTCCGTCTGGCCAGCCACAAACCAGAGCAGCTCCTCGGCCACCGCGCGGA 890360 Query 20724 AAAACACCCGCTTTGTGGTTAGTAAGGGAAAG 20755 | || || ||||| ||||| || | ||| ||| Sbjct 890359 AGAAGACGCGCTTGGTGGTCAGCAGGGGGAAG 890328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441341170121720