Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq5566 120 2e-22 seq1049 104 2e-17 seq1070 102 6e-17 seq997 95.1 1e-14 seq3746 87.8 1e-12 >seq5566 Length=752539 Score = 120 bits (132), Expect = 2e-22 Identities = 183/259 (71%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 37842 TGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGTATATGCGCATG 37901 |||||| | || ||| | ||||| ||||||||||| |||||||| | | |||||||| Sbjct 126224 TGGAACTCCGCGCAACTGCAGCTGGTGCGCGAGGGCAAGATGCACGGCTTTCTGCGCATG 126165 Query 37902 TATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGACC--GCGCTCAACTACG 37959 || ||| ||| || ||| | || ||| | | | | || | ||||| | || | Sbjct 126164 TACTGGGCCAAAAAGATTCTCGAGTGGACCGCCAC--CCCGGAACAGGCGCTGGAGTATG 126107 Query 37960 CCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACGGTTACGTCGGCT 38019 | ||| | || || ||||||||| | ||||| || ||||||||||| || ||||||| Sbjct 126106 CGATTCTGTTGAACGACAAGTACAGCCTCGACGGACGCGATCCCAACGGCTATGTCGGCT 126047 Query 38020 GTTTGTGGTCTATATGCGGGCTACACGATAGAGCCTGGCGCGAGATTCCCATTTACGGCA 38079 | ||||||| || |||| | ||||| | | |||| ||| | || | ||||| Sbjct 126046 GCATGTGGTCCATTGGCGGTGTCCACGACATGGGCTGGAAGGAGCGCGCGATATTCGGCA 125987 Query 38080 AGATTCGGTACATGAACTA 38098 || | |||||||||||||| Sbjct 125986 AGGTGCGGTACATGAACTA 125968 >seq1049 Length=1331 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 368 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 309 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 308 ATAACTGATATAATGAGCCTTTTGCGGTTTC 278 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 368 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 309 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 308 ATAACTGATATAATGAGCCTTTTGCGGTTTC 278 >seq1070 Length=1058 Score = 102 bits (112), Expect = 6e-17 Identities = 79/92 (86%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 114334 CATGTATT--GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAAC 114390 |||||||| |||||||||||||||| |||||||||||||||| | |||||||||||| Sbjct 662 CATGTATTTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAAC 721 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATC 114422 || |||||||||| |||||| || | ||| || Sbjct 722 CATAACTGATATAATGAGCCTTTTGCGGTTTC 753 Score = 102 bits (112), Expect = 6e-17 Identities = 79/92 (86%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 115531 CATGTATT--GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAAC 115587 |||||||| |||||||||||||||| |||||||||||||||| | |||||||||||| Sbjct 662 CATGTATTTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAAC 721 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATC 115619 || |||||||||| |||||| || | ||| || Sbjct 722 CATAACTGATATAATGAGCCTTTTGCGGTTTC 753 >seq997 Length=1008 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/86 (87%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTAT-CCAAGTAACTGAGTAAGATCTAAGGAAC 115587 |||||||| |||||||||||||||| ||||| ||||||||||| | |||||||||||| Sbjct 555 CATGTATTAGCTCTAGAATTACCACAGTTATACCAAGTAACTGTTAACGATCTAAGGAAC 496 Query 115588 CAAAACTGATATATTGAGCCATTCGT 115613 || |||||||||| |||||| || || Sbjct 495 CATAACTGATATAATGAGCCTTTTGT 470 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/86 (87%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTAT-CCAAGTAACTGAGTAAGATCTAAGGAAC 114390 |||||||| |||||||||||||||| ||||| ||||||||||| | |||||||||||| Sbjct 555 CATGTATTAGCTCTAGAATTACCACAGTTATACCAAGTAACTGTTAACGATCTAAGGAAC 496 Query 114391 CAAAACTGATATATTGAGCCATTCGT 114416 || |||||||||| |||||| || || Sbjct 495 CATAACTGATATAATGAGCCTTTTGT 470 >seq3746 Length=358675 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 || ||| || | ||| || ||||||| || || || ||||||||| |||||||| || Sbjct 174166 GATACCACCGCGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTC 174225 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 | || || |||| |||| ||||||||||| || ||||| |||||||||||| Sbjct 174226 GGACAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGG 174285 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATT 34075 || | || ||| |||||| || || ||| | ||| | | || | || | Sbjct 174286 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CATTCTCGATGGTGTCCGAAGGCT 174344 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || | || || || || ||||| || |||||||||||||||||||| Sbjct 174345 CCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 174396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397034656877866