Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5136 145 2e-29 seq4121 143 6e-29 seq5134 134 3e-26 seq3746 96.9 8e-15 >seq5136 Length=173398 Score = 145 bits (160), Expect = 2e-29 Identities = 150/195 (77%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| ||||| |||| || ||||||||||| || ||||||||||| || ||| Sbjct 116155 TCTTTCTGGATGTTATAATCGGACAGGGTGCGTCCGTCCTCCAATTGTTTTCCGGCAAAG 116214 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||||| || |||| ||||||||||| |||||||||||||| || ||||| Sbjct 116215 ATCAATCGCTGCTG---ATCTGGGGGGATTCCTTCCTTATCCTGGATTTTAGCCTTCACA 116271 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | ||| || || | ||||| || || || || || ||||| Sbjct 116272 TTCTCGATGGTATCGGAGGGTTCGACCTCCAAGGTGATGGTTTTTCCAGTGAGGGTCTTC 116331 Query 288460 ACGAATATCTGCATT 288474 || || ||||||||| Sbjct 116332 ACAAAGATCTGCATT 116346 Score = 132 bits (146), Expect = 1e-25 Identities = 147/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||| || ||||||||||| || | |||||| || |||||| Sbjct 115927 TCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTCCAGTTGTTTGCCAGCGAAG 115986 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| || |||| |||||||| || || || ||||| || || || || Sbjct 115987 ATGAGACGCTGCTG---ATCTGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTTACA 116043 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| | || ||||| || ||||| ||||| ||||||| |||||| Sbjct 116044 TTCTCGATGGTGTCGGATGGCTCGACTTCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTC 116103 Query 288460 ACGAATATCTGCATT 288474 ||||| ||||||||| Sbjct 116104 ACGAAGATCTGCATT 116118 Score = 131 bits (144), Expect = 4e-25 Identities = 146/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || || |||||||| || | ||| ||||| |||||| Sbjct 115015 TCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCCAGTTGCTTTCCGGCGAAG 115074 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| ||| |||||| ||||| || ||||||||||| || || || || Sbjct 115075 ATGAGACGCTGCTGA---TCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTTACA 115131 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| | || ||||| || ||||| || || ||||||| |||||| Sbjct 115132 TTCTCGATGGTGTCGGATGGCTCGACTTCCAGGGTGATGGTTTTTCCGGTCAAAGTCTTC 115191 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 115192 ACGAAGATTTGCAT 115205 Score = 131 bits (144), Expect = 4e-25 Identities = 146/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || |||||||| ||||| | || ||||| |||||| Sbjct 115243 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGTCCATCTTCAAGCTGCTTTCCGGCGAAG 115302 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| ||| |||||| || || || || || |||||||| || ||||| Sbjct 115303 ATCAAACGCTGCTGA---TCTGGGGGGATGCCCTCCTTGTCTTGGATTTTAGCCTTCACA 115359 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| | ||| || || || ||||| ||||| || |||| |||||| Sbjct 115360 TTCTCGATGGTATCAGAGGGTTCGACCTCCAGGGTGATGGTCTTGCCAGTCAAAGTCTTC 115419 Query 288460 ACGAATATCTGCAT 288473 |||||||||||||| Sbjct 115420 ACGAATATCTGCAT 115433 Score = 131 bits (144), Expect = 4e-25 Identities = 180/248 (73%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || |||||||| | || || | ||||| ||| ||| || ||||| || |||| Sbjct 116799 CATG-CCTCCGCGGAGACGGAGAACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGT 116857 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || |||||||| ||||| | || ||||| |||||||||| ||||| || | Sbjct 116858 CGGACAGGGTGCGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGG---T 116914 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| || || || ||||||||||| || || ||||| || || || | |||| | Sbjct 116915 CTGGGGGAATACCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATCGTATCGGAAG 116974 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG- 288477 || || || | ||||| ||||| || |||| ||||| || || |||||||| || Sbjct 116975 GCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATGTTGG 117034 Query 288478 -TTATTCT 288484 ||||||| Sbjct 117035 ATTATTCT 117042 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| ||||| |||| || || ||||| ||||| | |||||||| |||||| Sbjct 115699 TCCTTCTGGATGTTATAATCGGACAGAGTACGTCCATCTTCAAGCTGTTTTCCGGCGAAG 115758 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||||| || |||||| |||||||| |||||||| || || || || ||| Sbjct 115759 ATCAATCGCTGCTGG---TCTGGGGGAATTCCTTCCTTATCCTGAATCTTAGCCTTGACG 115815 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || | || || || || ||||| ||||| || |||| |||||| Sbjct 115816 TTTTCGATGGTGTCTGAAGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTG 115875 Query 288460 ACGAATATCTGCATT 288474 ||||| || |||||| Sbjct 115876 ACGAAGATTTGCATT 115890 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || | ||||| ||| || || || || || ||||| | Sbjct 116575 CCACCGCGCAGACGGAGGACTAAATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAA 116634 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||||||||| || | |||||| || |||||||||| ||||| || ||||||| Sbjct 116635 AGAGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATCAATCGCTGCTG---ATCTGGG 116691 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || ||||||||||| || || |||||||| || | || | || Sbjct 116692 GGAATTCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTTTCAATGGTGTCTGAAGGCTCA 116751 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| || || || || || ||||| || || |||||||| Sbjct 116752 ACCTCCAGGGTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 116801 >seq4121 Length=254077 Score = 143 bits (158), Expect = 6e-29 Identities = 149/194 (77%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| ||||| |||| || |||||||| ||||| | || || || |||||| Sbjct 189759 TCCTTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAG 189818 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| ||| |||||| || || || || |||||||| || || |||||| Sbjct 189819 ATCAAACGCTGCTGA---TCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTCACG 189875 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | ||| || || || || || ||||| |||||||||||||| Sbjct 189876 TTCTCAATGGTATCGGAGGGTTCGACCTCAAGGGTAATGGTCTTTCCGGTCAGAGTCTTC 189935 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 189936 ACGAAGATCTGCAT 189949 Score = 141 bits (156), Expect = 2e-28 Identities = 174/235 (74%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || | |||| ||| || || ||||| ||||| | Sbjct 189263 CATG-CCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAAT 189321 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| | ||||||||||| || | || ||||| ||||||||||||||||| || || Sbjct 189322 CGGACAAGGTGCGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTG---AT 189378 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || |||||||| || || |||||||| || || ||||| || || || | |||| | Sbjct 189379 CTGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAGG 189438 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || ||||| |||||||||||||| ||||| |||||||| Sbjct 189439 GCTCAACCTCAAGGGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 189493 Score = 140 bits (154), Expect = 8e-28 Identities = 148/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || |||||||| || || | || || || ||||| Sbjct 189531 TCCTTCTGGATGTTGTAGTCGGATAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAA 189590 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || |||| |||||||| || || |||||||| || || |||||| Sbjct 189591 ATCAGACGCTGCTG---ATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACG 189647 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | ||| | || || ||||| ||||| ||||| ||||||| |||||| Sbjct 189648 TTTTCGATGGTATCAGAAGGCTCAACCTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTC 189707 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 189708 ACGAAGATCTGCAT 189721 Score = 131 bits (144), Expect = 4e-25 Identities = 146/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || |||||||| || || | || ||||| |||||| Sbjct 189075 TCCTTCTGGATGTTGTAGTCGGATAGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAG 189134 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| ||| ||||| |||||| || || || ||||| || || |||||| Sbjct 189135 ATCAAACGCTGCTGA---TCTGGAGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACG 189191 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || | ||||| ||||| || || ||||||||| Sbjct 189192 TTCTCAATGGTATCGGATGGCTCGACCTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTG 189251 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 189252 ACGAAGATCTGCAT 189265 Score = 127 bits (140), Expect = 5e-24 Identities = 173/239 (72%), Gaps = 7/239 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || | |||| ||| || || ||||| ||||| | Sbjct 190175 CATG-CCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAAT 190233 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| | ||||||||||| || | || ||||| ||||||||||||||||| || || Sbjct 190234 CGGACAAGGTGCGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTG---AT 190290 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || |||||||| || || |||||||| || || || || || || || | |||| | Sbjct 190291 CTGGAGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGG 190350 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||| || || | ||||| ||||| || |||| |||||| || || || |||||| || Sbjct 190351 GTTCGACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATTTGCATTTTG 190409 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||||||||| || | || || || |||||| Sbjct 189987 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAG 190046 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| || |||| |||||||| || || |||||||| || || ||||| Sbjct 190047 ATCAAACGCTGCTG---ATCTGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACA 190103 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| | ||| || || | ||||| ||||| || ||||| |||||| Sbjct 190104 TTCTCGATGGTATCAGAGGGTTCAACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTG 190163 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 190164 ACGAAGATCTGCAT 190177 >seq5134 Length=897107 Score = 134 bits (148), Expect = 3e-26 Identities = 147/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || |||||||| | ||| ||||| || ||||| | || || || |||||| Sbjct 635897 TCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAG 635838 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| ||| ||||| ||||||||||| ||||| || || ||||| || Sbjct 635837 ATCAGACGCTGCTGA---TCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACA 635781 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| |||| ||| | ||| || || || ||||| ||||| || || || ||||| Sbjct 635780 TTTTCGATAGTATCCGAAGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTA 635721 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 635720 ACGAAGATCTGCAT 635707 >seq3746 Length=358675 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || ||||||||||| || | || || || |||||| Sbjct 174206 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAG 174265 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| ||| ||||| || || || |||||||| || || || || || Sbjct 174266 ATCAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTC 174325 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | || || || | ||||| ||||| ||||| || || || || Sbjct 174326 TCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACA 174385 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 174386 AAGATTTGCAT 174396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179567749591974