Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq5134 174 2e-38 seq5516 154 2e-32 seq5325 116 4e-21 >seq5134 Length=897107 Score = 174 bits (192), Expect = 2e-38 Identities = 727/1132 (64%), Gaps = 19/1132 (2%) Strand=Plus/Plus Query 113720 CCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAG 113779 || ||||| || ||||| | ||| ||||| | |||||||||||| || |||| Sbjct 539286 CCCCGATCTGCGGCCATTTTAATGGTGGACTTCACCGAGATTTCCCACACGGTCTTGTAC 539345 Query 113780 AGGTTCTTAATATCATCTGGGATATCCAC--GATATTTTGGATGGAGCCACCCGC-CTTG 113836 || | || | |||||| || || |||||||||||||||||| || || | | Sbjct 539346 AGATCGCGAACCT--TCTGGGGAATGGACTCGATATTTTGGATGGAGCC-CCTGCTCGAG 539402 Query 113837 ACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGA 113896 | || | | |||||| || | ||| | | | || | || ||| || | | Sbjct 539403 ATGATCTGGTTCTTCATGTCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTCAGCAAA 539462 Query 113897 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTG 113956 || | || || || ||||| || | || ||| || || ||||| || ||| Sbjct 539463 TGATGGTTAACCACCTGGAACTCGCCAGACAGCACGCGCCTGGTGTAAATATTTGTGGTG 539522 Query 113957 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGT 114016 || ||||| ||| | || ||||| |||| || || || || ||||| ||||||||||| Sbjct 539523 TAGGGCTCGAAGGATTCGTTGTTGCCCATTATCTGAGCAGTAGAGGCCGTGGGCATGGGA 539582 Query 114017 GCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAG 114076 || | || ||| ||| |||| ||| | | | | ||| ||||| || | |||| Sbjct 539583 GCGACAAGCAGGGAGTTCCGGACACCGTGCTGCTTGATGGACTCCTTCAGTTTTTGCCAG 539642 Query 114077 TCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCT 114136 || | | ||| |||| | |||||| || |||| || || || | | | Sbjct 539643 TCCCACAGATTCGTTGGCTCCTTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACG 539702 Query 114137 GGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG 114196 || ||||| | || ||||| || || || | || ||||| |||| |||| || || Sbjct 539703 GGGCTGCCCTCGTAGGTTTCGTAGGGTCCTTCGATCTGCGCCAGTTCGCAGCTGGCTTCC 539762 Query 114197 AGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA--TTGCCTTGGCCTCGTCGG 114254 ||||| ||| || || ||||| || || | |||| |||| ||||| ||| Sbjct 539763 AGGGCGCCGTAGTAGATGGTCTCGAATATCTGCTGGTTCAAGAGGCCT--GCCTCCTCGC 539820 Query 114255 AATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAA 114314 ||| | | || ||| | ||| | | || |||| || || ||||||| ||| | Sbjct 539821 TTTCATAGGGGAATCGCATGAGAATCAGGGCGTCAGCGAATCCCTGAACACCGATGCCCA 539880 Query 114315 TTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCT-CCACGGGATAAAAATTCCTATCG 114373 |||||||| |||| || ||||| || ||| || ||||||||| || | ||| Sbjct 539881 CAGGGCGATGCCTCAAGTTGGACTTCTTTGC-CTCTGGCAGGGGATAAAAGTTGATGTCG 539939 Query 114374 ATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCA 114433 || | | | || ||||||||||| || ||| || | ||| | ||||| | | | ||| Sbjct 539940 ATGATCTTGTTGAGATTTTTGGTCACCGTCTTGGTAACTTCCTTGAGCTTCTTGAAGTCA 539999 Query 114434 AAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACA 114493 | | |||| ||||| || || |||||||| || |||| || || || Sbjct 540000 TACGT---CTTCTCGGGTGTGACAAACATATTGAGGGCGATCGAGGCCAAGTTGCAGACG 540056 Query 114494 GAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATG 114553 | ||||||| | |||||| | ||||| || ||||| || | ||| ||| Sbjct 540057 GCAATCTCATCAGGCGAGGAGTACTCGACGATTTCGGTGCACAAGTTGCTGCACTTGATG 540116 Query 114554 GTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGC 114613 ||||| | |||| || || ||| ||| || ||||||||| | |||||||| || Sbjct 540117 GTGCCGACATTCTGCTGGTTGCTCTTCCGGTTGCAGGCATCCTTGAACAGCATGTAGGGG 540176 Query 114614 GTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGT 114672 |||| || ||| || | || | || || ||| | | | | || ||| || Sbjct 540177 TTCCCAGTTTCCACCTGAGCCTCAATGATGGCGAACCAAAGGGACTGAGCCT-TCACCGT 540235 Query 114673 GGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCAC 114732 |||||| || ||||| | ||||||||| ||| | ||| ||||| || ||| Sbjct 540236 TCGGTTGGCACGACCCTCTTGCTCGTACTTCTCGTACAACCTTTCGAACTCATCGCCCCA 540295 Query 114733 GGCCTC-TGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCT 114791 | || ||| || || || || | ||||| | ||| ||||| | ||| ||| Sbjct 540296 CACATCGTGA-AGGCCGGGGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCT 540354 Query 114792 CAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCG 114843 | || |||||||| ||||| || || ||||| || || |||| ||||| || Sbjct 540355 CGACGCGCTTCATAAAGAGATCGGGTATCCACAGGGCGTAGAACAGATCGCG 540406 >seq5516 Length=367667 Score = 154 bits (170), Expect = 2e-32 Identities = 309/447 (69%), Gaps = 12/447 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || ||| |||||| |||||||| ||||| ||||||| ||| ||||||| Sbjct 269699 GTACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCCAT 269758 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGC-AC-CCCAATCTGTTTGAGGAGA 125875 || | || |||||||| | || | || ||| | || |||||| | || | Sbjct 269759 GAAGTTGAAGGGGTTCTTCGTATTGTAGATC-TTGCCGACGCCCAAT-TCCACCAGCAAG 269816 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 ||||||| ||| |||| ||||||| |||||| || | ||||| ||||||||||| Sbjct 269817 CGATCCGCCACGAACTCGATGTACTGCGACATCAGATCGCAATTCATGCCGATGAGGTT- 269875 Query 125936 CATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGC 125994 || ||| || || || || |||| ||| ||||| |||| || || || |||| Sbjct 269876 CACGGGCAGGGCATCGGTGAGGAACTCCTGTTCAATGGCCACTGCATCTCG---GATGAT 269932 Query 125995 GTGAATGGTGTCCACCC--CAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAA 126051 | |||| || | | | | || ||| | |||| || ||| | ||||||||| Sbjct 269933 CTCAATGATGCGCTCGCGGCGGGGTCGCTGCACCAAGTGCTGGAACATCAGCACGGCAAA 269992 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || ||| || |||||||| |||||||| || || || |||||| |||||| ||||| Sbjct 269993 GTCGCAGTGAAGGCCCTCGTCTCGGGAGATAAGCTCGTTGGAGAAGGTCAGTCCCGGCAT 270052 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 ||||| |||||||||| ||||||||| | || || ||||||||| ||||| Sbjct 270053 CAGACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTC 270112 Query 126172 CACACACGCGAACGCAAAGAGACGCTC 126198 || ||||| |||| || ||||| Sbjct 270113 GACGGCAGCGAAGGCAATGATGCGCTC 270139 >seq5325 Length=269097 Score = 116 bits (128), Expect = 4e-21 Identities = 172/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 171907 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATT 171966 ||||||||| ||| | | || || || || ||||| | ||| || || ||||| ||||| Sbjct 224396 ATCTTTGCCGCCCGTCAAGCGAGTACCGAACTGACCGCGCGGCTCCAGCAGATTAATATT 224455 Query 171967 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 172025 ||| | |||| ||| | ||||| || || || || ||| || || || || |||| Sbjct 224456 GTTGGCGCCCACAAAGTTCTGGGCCAGATTAACGATGGTCATCTGC-AGCGAAACCTCAC 224514 Query 172026 CGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCAT 172085 ||||||||||||||||| | || || || | ||| || ||| |||||||||| ||| Sbjct 224515 CGTGATGGTAGGCCGACATCTCGGCCACCGAACCCGACAGCTGGGCCACCTTCACCTCTC 224574 Query 172086 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGT 172145 |||| |||| | | |||||| | |||| ||||| | ||| ||||| | |||| Sbjct 224575 GCTTGTCGTTCCTCTTGAAGCAGGTGAACATCACCTTGCGCTGACCCGGCTTCAAACCGT 224634 Query 172146 C 172146 | Sbjct 224635 C 224635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597310792147640