Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq5134 311 9e-80 >seq5134 Length=897107 Score = 311 bits (344), Expect = 9e-80 Identities = 959/1459 (66%), Gaps = 51/1459 (3%) Strand=Plus/Minus Query 93927 GCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTT 93986 ||| ||| |||| ||||||||||| | || | | ||||||||||||| || ||||| Sbjct 540746 GCCGCAGCTGTCCTCGTGTTTCCTCCTCACCATGACGGCCGACTCCATCGAGGGCATTTT 540687 Query 93987 CGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGT 94046 | | | | || | || || | ||||| || | || || || |||||| | | ||| Sbjct 540686 CAAGTCCGTGGAGCAGTGCGCCATGATCTCGAAGTCGGCTGGCGGCATCGGGCTAAATGT 540627 Query 94047 CCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCT 94106 |||| | | || || | ||| ||| || |||| || || ||||||||||| ||||| Sbjct 540626 CCACTGCATCCGGGCGAAGGGCACCTCGATTTGCGGCACGAACGGCACCTCCAATGGCCT 540567 Query 94107 CGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAG 94166 ||| || ||||| ||||||||||||| | ||| || || ||||| ||||| || || | Sbjct 540566 CGTTCCCATGCTGAGGGTCTTCAACAATGTGGCACGTTATGTGGATCAGGGCGGCGGCAA 540507 Query 94167 GAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCAT 94226 | | || | || || | || || |||||||||||| ||||||| | ||| | Sbjct 540506 GCGTCCCGGCGCCTTTGCCATTTACCTGGAGCCCTGGCACTCGGACGTCTTTGAGTTCCT 540447 Query 94227 CGACCTGCGAAAGAACCACGGCAACGATCTGGAGA---GGGCCAGAGACCTCTTCTACGC 94283 || ||| |||||| |||||| || ||||| | ||| | || || |||||||| Sbjct 540446 GGAACTGAAGAAGAACACCGGCAAGGA---GGAGAACCGCGCCCGCGATCTGTTCTACGC 540390 Query 94284 TCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTT 94343 || ||| | || || || |||||||| ||||||||| || || ||| || | Sbjct 540389 CCTGTGGATACCCGATCTCTTTATGAAGCGCGTCGAGGCCAATGGCGATTGGTCGCTCAT 540330 Query 94344 TTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTG--GATCGCGTTTTGAAGACTTG 94401 || ||| | |||| ||||| || ||| || || | ||| | | || ||| ||| Sbjct 540329 GTGCCCCCACAAATGCCCCGGCCTTCACGATGTGTGGGGCGAT-GAG-TTCGAAAGGTTG 540272 Query 94402 TATGCTCGTTACGAATCGCAGGGCAAGGCCA--GGAAGGTTATGGATGCTAGGAAGCTGT 94459 || | ||||| |||| |||| ||| | || | ||| | || | Sbjct 540271 TACGAGAAGTACGAGCAAGAGGGTCGTGCCAACCGAACG--GTGAAGGCTCAGTCCCTTT 540214 Query 94460 GGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACT 94519 || ||| | || | |||||||| || || | |||||||| |||||||||| Sbjct 540213 GGTTCGCCATCATTGAGGCTCAGGTGGAAACTGGGAACCCCTACATGCTGTTCAAGGATG 540154 Query 94520 CTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCA 94579 | |||| ||| |||||||||| | |||| |||||| || || |||||| Sbjct 540153 CCTGCAACCGGAAGAGCAACCAGCAGAATGTCGGCACCATCAAGTGCAGCAACTTGTGCA 540094 Query 94580 CCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCA 94639 |||| || |||||||| | || || || |||||||| || || ||| ||| ||| ||| Sbjct 540093 CCGAAATCGTCGAGTACTCCTCGCCTGATGAGATTGCCGTCTGCAACTTGGCCTCGATCG 540034 Query 94640 ACCTGTCCACTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGC 94699 ||| || | | || || | |||| | ||| || | || ||| Sbjct 540033 CCCT---CAATAT-GT-----TTGTC-ACAC--CCGAGAAGACGTATGACTTCAAGAAGC 539986 Query 94700 T-TGTGAACTTCGCGGGAAGGATGGTCTTGAACCTGAACAGGGTAATCGACAAGAACTTC 94758 | ||| || | || || || | || || |||| | | ||||||| ||||| Sbjct 539985 TCAAGGAAGTTACCAAGACGG-TGACCAAAAATCTCAACAAGATCATCGACATCAACTTT 539927 Query 94759 TACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTC 94818 || ||| | || ||||| |||| || ||| ||| |||||| || | |||||||| || Sbjct 539926 TATCCCCTGCCAGAGGCAAAGAAGTCCAACTTGAGGCATCGCCCTGTGGGCATCGGTGTT 539867 Query 94819 CAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCG 94878 ||||| ||||| ||||| ||| | | ||||| | ||||| || ||| | ||| Sbjct 539866 CAGGGATTCGCTGACGCCCTGATTCTCATGCGATTCCCCTATGA---AAGCGAGGAGGCA 539810 Query 94879 GG---TTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCAT-GAAACAATCCGT 94934 || ||||| | | |||||||| | ||| || ||||| ||| | ||| | | | | Sbjct 539809 GGCCTCTTGAACCAGCAGATATTCGAGACCATCTACTACGGCGCCCTGGAAGCCAGCTGC 539750 Query 94935 CCACTTGGCCAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCGCCCTTGGAAC- 94993 ||| | ||||||| | || || ||||| | | || || |||| || | Sbjct 539749 GAACTGGCGCAGATCGAA----GGACCCTACGAAAC-CTACGAGGGCAGCCCCGTGAGCA 539695 Query 94994 AGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAG 95053 |||| ||| | |||| |||| | |||| | |||| || ||||| |||||| || Sbjct 539694 AGGGAATTCTGCAGTACGACATGTGGGACAAGGAGCCAACGAATCTGTGGGACTGGCAAA 539635 Query 95054 CTCT-ACGCGCTGATGTTATCA---AACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCC 95109 || | | || |||| | |||||||| ||| | |||||||| || ||| Sbjct 539634 AACTGAAG----GAGTCCATCAAGCAGCACGGTGTCCGGAACTCCCTGCTTGTCGCTCCC 539579 Query 95110 ATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACC 95169 |||||||||||||| || || ||||| | ||||||||||| || ||||| |||| |||| Sbjct 539578 ATGCCCACGGCCTCTACTGCTCAGATAATGGGCAACAACGAATCCTTCGAGCCCTACACC 539519 Query 95170 TCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTC 95229 | || | |||| |||||| ||||| | || || |||| || | ||| | || | Sbjct 539518 ACAAATATTTACACCAGGCGCGTGCTGTCTGGCGAGTTCCAGGTGGTTAACCATCATTTG 539459 Query 95230 CTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGC 95289 || ||||||| ||| |||| |||||| ||| | | |||||||| | | | | Sbjct 539458 CTGAGGGACCTAACGGAGCTGGACTTGTGGGACGACGACATGAAGAACCAGAT-CATCTC 539400 Query 95290 G-CCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAA 95348 | || |||||| |||| || ||| | || || || | | | || ||||| Sbjct 539399 GAGCAGGGGCTCCATCCAAAATATCGAGTCCATTCCCCAGAAGGTTCGCGATCTGTACAA 539340 Query 95349 GACCGTGTGGGAGATCCCG 95367 |||||||||||| ||| || Sbjct 539339 GACCGTGTGGGAAATCTCG 539321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494687746898680