Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq5073 100 2e-16 seq5461 96.9 3e-15 seq5062 87.8 1e-12 >seq5073 Length=413631 Score = 100 bits (110), Expect = 2e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414 |||||||| |||||||| ||||| | ||||| ||||||||||||| ||| | | Sbjct 263898 ACGGCCGGAGTCCATCGCCTGTGGTCGCACAAGGCCTACAAGGCCAAGCTGCCGCTGCGC 263957 Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474 | ||||| ||| ||| ||| |||| ||||||| |||| | ||||| | | Sbjct 263958 ATCTTCCTCATGCTGTGCCAGTCGCTGGCCTTCCAGAACAGCATCTGGGAGTGGACCCGC 264017 Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534 || ||| | || |||||||||| | | ||||| ||||| || |||||| | | Sbjct 264018 GACCACCGCGTCCACCACAAGTTCACCGACACACACGCCGATCCCCACAACTCGCGGCGC 264077 Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGA 108589 || |||| ||| | ||| |||| ||||| ||| | ||| ||||||| |||| Sbjct 264078 GGCTTCTTCTTCGCCCACATGGGCTGGCTGATGTGCAAGAAGCACCCCGATGTGA 264132 Score = 93.3 bits (102), Expect = 3e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 108862 AACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTC 108921 ||||| ||||| | | ||| | ||||||||||||||||||||||||||||||| ||| Sbjct 264816 AACAAGCTGGTGTCCACTTTGACCATCGGCGAGGGATGGCACAACTACCACCACGTCTTC 264875 Query 108922 CCCTACGACTACAAGGCCGCCGAGTTGGG 108950 |||| ||||||||||| || ||| |||| Sbjct 264876 CCCTGGGACTACAAGGCAGCTGAGCTGGG 264904 >seq5461 Length=1531032 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507 ||||||||| | | ||||| | || || ||||||| ||||| || || || ||| Sbjct 452453 CAGAACACCCTGTATGACTGGGTTCGGGACCATCGGGTTCATCACAAATATTCAGAGACG 452394 Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567 ||||| || ||||| ||||| ||||| |||| ||||| |||||||||||||| ||| Sbjct 452393 GATGCCGATCCCCACAATGCCAATAGGGGATTCTTTTTCTCCCACGTGGGATGGCTGATG 452334 Query 108568 ATGACCAAGGACCCCGACGTGATCT-CGGC-CGGTCGAAAAATGGACATGACGGACATAT 108625 ||| ||| |||| || || ||| || | ||||| | || ||||||| ||||| Sbjct 452333 ATGCTGAAGCACCCGGAAGT--TCTGCGTCGTGGTCGCCAGATCGACATGAGTGACATTC 452276 Query 108626 ACTCCGATCCGGTGGTAGTGTGGCACACCAAGTACTTTATTCCTCTTAA 108674 | ||||| ||||| || || |||||||| || || || || Sbjct 452275 TGGCGGATCCCGTGGTGCGGTTCCATCAGAAGTACTTCATCCCCCTGAA 452227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 108889 GGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTG 108948 || |||||||||||||||||||||||||| ||||||| |||||||| || |||||| || Sbjct 451527 GGTGAGGGATGGCACAACTACCACCACGTCTTCCCCTGGGACTACAAAGCAGCCGAGCTG 451468 Query 108949 GGGAACGAC 108957 || ||| || Sbjct 451467 GGCAACTAC 451459 >seq5062 Length=476003 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940 |||| |||||||||||||||| |||||||||||||| ||||||| ||||||||| | | Sbjct 253385 TGGCCTTCGGCGAGGGATGGCATAACTACCACCACGTCTTCCCCTGGGACTACAAGACGG 253326 Query 108941 CCGAGTTGGGGAACGACT---TTAATTTCACC 108969 ||||||| || || ||| | || |||||| Sbjct 253325 CCGAGTTCGGCAAATACTCGCTAAACTTCACC 253294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381746125176552