Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq5136 113 3e-20 seq4121 93.3 3e-14 seq5134 82.4 5e-11 >seq5136 Length=173398 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| |||||||| || || || ||||||||||| ||| | | | | ||||| Sbjct 116365 ACCAAATGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGCCCATCTTCA 116424 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || |||||||| | ||||||||||| || || |||||||| |||||||| Sbjct 116425 AGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGG 116484 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| ||||||| | || || || ||| || || || | ||| ||||| || Sbjct 116485 ATTTTGGCTTTTACATTCTCAATTGTGTCGGATGGCTCGACTTCCAGGGTGATGGTCTTG 116544 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| || || ||||| || |||||| Sbjct 116545 CCAGTCAGCGTCTTCACAAAGATCTGCATA 116574 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||||||||||| || || || || || |||||||| || Sbjct 116575 CCACCGCGCAGACGGAGGACTAAATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAA 116634 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | |||| || | ||||||||| ||| | ||||| ||||| || || ||| Sbjct 116635 AGAGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGGGGA 116694 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| |||||||| ||||| || || |||| || || || | || || Sbjct 116695 ATTCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTTTCAATGGTGTCTGAAGGCTCAACC 116754 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| |||||||| || || || || || ||||| || ||||| Sbjct 116755 TCCAGGGTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 116801 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| |||||||| || || || |||||||||||| || | | |||| || Sbjct 115909 ACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTCC 115968 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||||||||||| | || | |||||| || || || ||||| |||||||| Sbjct 115969 AGTTGTTTGCCAGCGAAGATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCTTGG 116028 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| |||||| | || || || ||| || || || | ||| ||||| || Sbjct 116029 ATCTTGGCCTTTACATTCTCGATGGTGTCGGATGGCTCGACTTCCAGGGTGATGGTCTTT 116088 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| ||| || || || || ||||| Sbjct 116089 CCGGTCAAAGTCTTCACGAAGATCTGCAT 116117 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||||||||| || || || || |||||||| ||| || | | | ||||| Sbjct 116820 AACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTC 116879 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || || ||| | ||||| ||||| ||||| ||||| || ||||| || Sbjct 116880 GAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTATCCTG 116939 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || ||| | || || |||||| | || || || ||||| ||||| || Sbjct 116940 GATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTT 116999 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15182 || |||| || || ||||| || ||||| || || Sbjct 117000 GCCAGTCAAGGTCTTCACAAAGATCTGCATGTTGGA 117035 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || | || || ||||| || ||||| |||||| || | | |||| || Sbjct 116136 AACCAAGTGCAAAGTGGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGTCCGTCCTC 116195 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 |||||||| || || | ||||| ||||| || || || ||||||||||| || Sbjct 116196 CAATTGTTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCCTTATCCTG 116255 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||| || ||| | || || |||||| ||| || || ||||| |||||||| Sbjct 116256 GATTTTAGCCTTCACATTCTCGATGGTATCGGAGGGTTCGACCTCCAAGGTGATGGTTTT 116315 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || ||||| || ||||| Sbjct 116316 TCCAGTGAGGGTCTTCACAAAGATCTGCAT 116345 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || |||||||| || || || || ||||| |||||| ||| | | | ||||| Sbjct 115680 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAATCGGACAGAGTACGTCCATCTTC 115739 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||| || ||| | ||||| ||||| ||||| |||||||||||||| || Sbjct 115740 AAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTATCCTG 115799 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || || || |||| || || || | || || || | || ||||| || Sbjct 115800 AATCTTAGCCTTGACGTTTTCGATGGTGTCTGAAGGCTCAACCTCAAGAGTGATGGTCTT 115859 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| || || || || |||||||| Sbjct 115860 GCCAGTCAAGGTCTTGACGAAGATTTGCAT 115889 >seq4121 Length=254077 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | || || |||||||| || || || || ||||| |||||| Sbjct 190177 TGCCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCG- 190235 Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || || || |||| || | || || |||||| | |||| |||||| || || Sbjct 190236 -GACAAGGTGCGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGG 190294 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 || ||||| |||||||| || || || ||| | || || |||||| ||| Sbjct 190295 AGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGGTTC 190354 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || || ||||| || || |||| ||| || |||||||||||||| || Sbjct 190355 GACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATTTGCATTTT 190408 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || ||||| || || ||||| ||||| |||||| ||| | | | ||||| Sbjct 189741 ACCAAGTGGAGGGTTGACTCCTTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCC 189800 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| ||| | ||||||||||| || || || || || |||||||| Sbjct 189801 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATACCCTCCTTGTCCTGG 189860 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || || | || || |||||| ||| || || | ||||||||| || Sbjct 189861 ATCTTGGCCTTCACGTTCTCAATGGTATCGGAGGGTTCGACCTCAAGGGTAATGGTCTTT 189920 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||||||| || || || || |||||| Sbjct 189921 CCGGTCAGAGTCTTCACGAAGATCTGCATA 189950 >seq5134 Length=897107 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| | || ||||||||| | |||| |||||| || || ||||||||||| ||| Sbjct 635861 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 635802 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || ||| ||| ||| ||| |||| |||||||| | ||| || || | || ||| Sbjct 635801 TCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGAGTGATG 635742 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || || || || || || || || ||||| || Sbjct 635741 GTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 635704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357367028685905