Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5134 260 1e-64 seq5136 89.7 5e-13 >seq5134 Length=897107 Score = 260 bits (288), Expect = 1e-64 Identities = 1145/1795 (64%), Gaps = 38/1795 (2%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||| ||||||| || || || ||||| |||||||| || || || | ||||| Sbjct 540898 AAGATCGCCGAGCGCCCGCAGCACATGCTGATGCGCGTGGCGATCGGAATACACGGGGAG 540839 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 || ||||| || ||||| || || | |||| | | ||||| || ||| Sbjct 540838 GATATCGATGCAGCCGTGGAAACGTATAATCTCTTGTCGGAGCGTTACTTCACCCATGCG 540779 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 ||||| | || ||||| | |||||| ||| ||| |||| |||||||| | ||| Sbjct 540778 TCGCCCACACTTTTTGCCGCTGCCACGAATCGGCCGCAGCTGTCCTCGTGTTTCCTCCTC 540719 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAA--CTTTGCGCGATTGCGCGTTGA 123135 ||| || | ||| |||| || || | | || | | | || | ||||| ||| Sbjct 540718 ACCATGACGGCCGACTCCATCGAGGGCATTT-TCAAGTCCGTGGAGC-AGTGCGCCATGA 540661 Query 123136 TTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCC 123195 | || || | | |||||||| || | || || ||| | | | ||| || || Sbjct 540660 TCTCGAAGTCGGCTGGCGGCATCGGGCTAAATGTCCACTGCATCCG-GGCGAAGGGCACC 540602 Query 123196 GC-ATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAAT 123254 | || | |||| |||| | | || || |||| |||||||| | || | ||| Sbjct 540601 TCGATTTGCGGCACGAACGGCACCTCCAATGGCCTCGTTCCCATGCTGAGGGTCTTCAAC 540542 Query 123255 AACGCCGTGCGGCACGTCGACCAGGGCGGC---AAACGCAAAGGCGCGATGGCGATCTAT 123311 || | | || | || || ||||||||| || || ||||| | || || || Sbjct 540541 AATGTGGCACGTTATGTGGATCAGGGCGGCGGCAAGCGTCCCGGCGCCTTTGCCATTTAC 540482 Query 123312 CTAGAACCGTGGCACGTTGATGTGTACGATTTTTTA-AATTTAAAACGCAACATGGGGGC 123370 || || || |||||| || || | || || | || | || | | |||| || Sbjct 540481 CTGGAGCCCTGGCACTCGGACGTCTTTGAGTTCCTGGAACTGAAGAAG-AACACCGGCAA 540423 Query 123371 GGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCG 123430 ||| || || ||||||||| |||| ||||| | ||| |||||||| | |||||| Sbjct 540422 GGAGGAGAACCGCGCCCGCGATCTGTTCTACGCCCTGTGGATACCCGATCTCTTTATGAA 540363 Query 123431 ACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAG 123490 ||||| | | | | |||| |||||||||||||| ||| | || |||||| | Sbjct 540362 GCGCGTCGAGGCCAATGGCGATTGGTCGCTCATGTGCCCCCACAAATGCCCCGGCCTTCA 540303 Query 123491 CGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGG-----C 123545 ||| || | ||| || |||| || |||||||| | | ||||||| || || | Sbjct 540302 CGATGTGTGGGGCGATGAGTTCGAAAGGTTGTACGAGAAGTACGAGCAAGAGGGTCGTGC 540243 Query 123546 AAACAGGTTAGTCA-GGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGT 123604 ||| | || | || || | | | | | |||| | ||| || | || || Sbjct 540242 CAACCGAACGGTGAAGGCTCAGTCCCTT---TGGTTCGCCATCATT---GAGGCTCAGGT 540189 Query 123605 CGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAG 123664 ||||| || | || |||||||| | ||| || ||||||||| |||| | ||| ||| Sbjct 540188 GGAAACTGGGAACCCCTACATGCTGTTCAAGGATGCCTGCAACCGGAAGAGCAACCAGCA 540129 Query 123665 CAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGC 123724 || | || || || || || || || | ||| ||||||| |||| ||| | | Sbjct 540128 GAATGTCGGCACCATCAAGTGCAGCAACTTGTGCACCGAAATCGTCGAGTACTCCTCGCC 540069 Query 123725 CGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAAAACGG 123784 ||| | | ||||| || || ||||| ||||| | | ||| | ||| | | | | Sbjct 540068 TGATGAGATTGCCGTCTGCAACTTGGCCTCGATCGCCCTCAATATGTTTGTC-ACACCCG 540010 Query 123785 CG----CTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGA 123840 | | | | | ||| | | |||||| | || || || || || ||| | | Sbjct 540009 AGAAGACGTATGACTTCAAGAAGCTCAAGGAAGTTACCAAGACGGTGACCAAAAATCTCA 539950 Query 123841 ACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAAC 123900 |||| || ||||| | || |||||||| || || || ||| || |||| | Sbjct 539949 ACAAGATCATCGACATCAACTTTTATCCCCTGCCAGAGGCAAAGAAGTCCAACTTGAGGC 539890 Query 123901 ACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGC 123960 | | || || || | || |||| || || || ||||| | | | |||| | | Sbjct 539889 ATCGCCCTGTGGGCATCGGTGTTCAGGGATTCGCTGACGCCCTGATTCTCATGCGATTCC 539830 Query 123961 CGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACG 124020 | || |||||||| || ||| | | || ||| ||| ||| || || || |||| Sbjct 539829 CCTATGAAAGCGAGGAGGCAGGCCTCTTGAACCAGCAGATATTCGAGACCATCTACTACG 539770 Query 124021 GCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGG 124080 |||| |||| || ||||||||||| ||| | || | || | ||||||| |||| || Sbjct 539769 GCGCCCTGGAAGCCAGCTGCGAACTGGCGCAGATCGAAGGACCCTACGAAACCTACGAGG 539710 Query 124081 GCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATT 124140 ||||||| | |||| || ||| ||||||||||||||||| | || || ||| Sbjct 539709 GCAGCCCCGTGAGCAAGGGAATTCTGCAGTACGACATGTGGGACAAGGAGCCAACGAATC 539650 Query 124141 TGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGT 124200 ||||||||||| | || | ||| | ||||||| | || ||||| ||| Sbjct 539649 TGTGGGACTGGCAAAAACTGAAGGAGTCCATCAAGCAGCACGGTGTCCGGAACTCCCTGC 539590 Query 124201 TGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCG 124260 | || || |||||| ||||| | |||||||| || | || |||||||||||||||| Sbjct 539589 TTGTCGCTCCCATGCCCACGGCCTCTACTGCTCAGATAATGGGCAACAACGAATCCTTCG 539530 Query 124261 AGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAA 124320 |||| | ||| | ||| | ||| | || ||| | | ||||| || || ||| | | Sbjct 539529 AGCCCTACACCACAAATATTTACACCAGGCGCGTGCTGTCTGGCGAGTTCCAGGTGGTTA 539470 Query 124321 ATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATGCGCAACG 124380 | ||||||||| || ||| | || | | | |||| || || ||||| ||| Sbjct 539469 ACCATCATTTGCTGAGGGACCTAACGGAGCTGGACTTGTGGGACGACGACATGAAGAACC 539410 Query 124381 AAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAACACGTCAAGC 124440 | || || || | | ||| | | || |||| || ||||| | | || Sbjct 539409 AGATCATCTCGAGCAGGGGCTCCATCCAAAATATCGAGTCCATTCCCCAGAAGGTTCGCG 539350 Query 124441 AACTGTACAAAACCGTGTGGGAAAT----GAAAAATAAACGATTAATTGAAATGGCCGTC 124496 | |||||||| |||||||||||||| | || | || |||| ||||||||| Sbjct 539349 ATCTGTACAAGACCGTGTGGGAAATCTCGGTGAAGTCCACCATTA----AAATGGCCGCA 539294 Query 124497 GACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAACCCACC 124556 || || || |||| || || || ||||| || || || | ||| || || || | Sbjct 539293 GATCGGGGTGCGTTCATAGACCAGAGTCAGTCGTTCAATATTCATGTGGCAGAGCCGAAT 539234 Query 124557 TACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGC-GGACTCAAAACGGGCAT 124615 |||| |||| ||||||| | | | |||| ||| || |||||||| || || Sbjct 539233 TACGGAAAGCTGACGTCCATACACTTTTATTCCTGGA-AAGCTGGTCTCAAAACAGGGAT 539175 Query 124616 GTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAAA 124670 ||||||| | | || || ||||| || |||| || || || || || || ||| Sbjct 539174 GTATTACCTGCGCACAAAGCCGGCTGCAAATGCTATCCAGTTCACAGTGGATAAA 539120 >seq5136 Length=173398 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||||||||| || | | ||| | |||| || || ||||| ||||| || || ||| Sbjct 114976 ATTCCTCCGCGAAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCG 115035 Query 45171 CTGACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | || |||| ||| ||||| ||| | || | || ||||| || | Sbjct 115036 --GACAGAGTACGTCCGTCCTCCAGTTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTG 115093 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| || || ||||| || || || || | || | ||||||||| | || Sbjct 115094 GGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCGGATGGCT 115153 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| || || | ||||| ||||| | ||| || || || |||||||| Sbjct 115154 CGACTTCCAGGGTGATGGTTTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 115205 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| || || | | || | |||| || || || || ||||| ||||||||| Sbjct 116116 ATTCCTCCACGAAGACGGAGAACCAAGTGCAAAGTGGACTCTTTCTGGATGTTATAATCG 116175 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || |||||||||||||| || | |||||||| ||||| || || Sbjct 116176 GACAGGGTGCGTCCGTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGCTGATCTGGG 116235 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| ||||| || ||||| || | || | ||| ||||| | ||| Sbjct 116236 GGGATTCCTTCCTTATCCTGGATTTTAGCCTTCACATTCTCGATGGTATCGGAGGGTTCG 116295 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | ||||| || || || || || ||||| || ||||| Sbjct 116296 ACCTCCAAGGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAGATCTGCAT 116345 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||||||||| | | || | ||| || || |||||||| ||||| || || ||| Sbjct 116800 ATGCCTCCGCGGAGACGGAGAACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCG 116859 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || ||||| ||| | |||||||| |||||||| || Sbjct 116860 GACAGGGTGCGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGG 116919 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || ||||| || || || || | || | || ||||||| ||| Sbjct 116920 GGAATACCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCC 116979 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | || ||||| || | || || ||||| || ||||| Sbjct 116980 ACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 117029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451970808320680