Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5134 159 4e-34 seq5516 136 5e-27 seq5325 125 9e-24 >seq5134 Length=897107 Score = 159 bits (176), Expect = 4e-34 Identities = 726/1133 (64%), Gaps = 21/1133 (2%) Strand=Plus/Plus Query 115681 CCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAG 115740 |||||||| || ||||| | ||| ||||| | |||||||||||| || |||| Sbjct 539286 CCCCGATCTGCGGCCATTTTAATGGTGGACTTCACCGAGATTTCCCACACGGTCTTGTAC 539345 Query 115741 AGGTTCTTAATATCATCTGGGATATCCAC--GATATTTTGGATAGAGCCACCTGC-CTTG 115797 || | || | |||||| || || |||||||||||| ||||| ||||| | | Sbjct 539346 AGATCGCGAACCT--TCTGGGGAATGGACTCGATATTTTGGATGGAGCC-CCTGCTCGAG 539402 Query 115798 ACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGG 115857 | || | | |||||| || | ||| | | | || | | || ||| || | Sbjct 539403 ATGATCTGGTTCTTCATGTCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTCAGCAAA 539462 Query 115858 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTG 115917 || | || || || ||||| || | || ||| || || || || || ||| Sbjct 539463 TGATGGTTAACCACCTGGAACTCGCCAGACAGCACGCGCCTGGTGTAAATATTTGTGGTG 539522 Query 115918 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 115977 || ||||| ||| | || ||||| |||| || || || || ||||| ||||||||||| Sbjct 539523 TAGGGCTCGAAGGATTCGTTGTTGCCCATTATCTGAGCAGTAGAGGCCGTGGGCATGGGA 539582 Query 115978 GCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAG 116037 || | || ||| ||| |||| ||| | | | ||| ||||| || | |||| Sbjct 539583 GCGACAAGCAGGGAGTTCCGGACACCGTGCTGCTTGATGGACTCCTTCAGTTTTTGCCAG 539642 Query 116038 TCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCT 116097 || | | ||| |||| |||||||| || |||| || || || | | | | Sbjct 539643 TCCCACAGATTCGTTGGCTCCTTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACG 539702 Query 116098 GGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG 116157 || ||||| | || || || || || || | || ||||| |||| |||| || || Sbjct 539703 GGGCTGCCCTCGTAGGTTTCGTAGGGTCCTTCGATCTGCGCCAGTTCGCAGCTGGCTTCC 539762 Query 116158 AGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATT--GCCTTGGCCTCGTCGG 116215 ||||| ||| || || ||||| || || | |||| |||| ||||| ||| Sbjct 539763 AGGGCGCCGTAGTAGATGGTCTCGAATATCTGCTGGTTCAAGAGGCCT--GCCTCCTCGC 539820 Query 116216 AATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAA 116275 ||| | | || || | ||| | | || |||| || || ||||||| ||| | Sbjct 539821 TTTCATAGGGGAATCGCATGAGAATCAGGGCGTCAGCGAATCCCTGAACACCGATGCCCA 539880 Query 116276 TTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC-CACGGGATAAAAATTCCTATCG 116334 |||||||| |||| || ||||| || ||| || ||||||||| || | ||| Sbjct 539881 CAGGGCGATGCCTCAAGTTGGACTTCTTTGCC-TCTGGCAGGGGATAAAAGTTGATGTCG 539939 Query 116335 ATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCA 116394 || | | | || ||||||||||| || ||| || | ||| | ||||| | | | ||| Sbjct 539940 ATGATCTTGTTGAGATTTTTGGTCACCGTCTTGGTAACTTCCTTGAGCTTCTTGAAGTCA 539999 Query 116395 AAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACA 116454 | | |||| ||||| || || |||||||| || |||| || || || Sbjct 540000 TACGT---CTTCTCGGGTGTGACAAACATATTGAGGGCGATCGAGGCCAAGTTGCAGACG 540056 Query 116455 GAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATG 116514 | ||||||| | |||||| | ||||| || ||||| || | ||| ||| Sbjct 540057 GCAATCTCATCAGGCGAGGAGTACTCGACGATTTCGGTGCACAAGTTGCTGCACTTGATG 540116 Query 116515 GTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGC 116574 ||||| | |||| || || ||| ||| || ||||||||| | ||||| || || Sbjct 540117 GTGCCGACATTCTGCTGGTTGCTCTTCCGGTTGCAGGCATCCTTGAACAGCATGTAGGGG 540176 Query 116575 GTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGT 116633 |||| || ||| || | || | || || ||| | | | | || ||| || Sbjct 540177 TTCCCAGTTTCCACCTGAGCCTCAATGATGGCGAACCAAAGGGACTGAGCCT-TCACCGT 540235 Query 116634 GGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTC-ACCCA 116692 |||||| || ||||| | ||||||||| ||| | || ||||| || |||| Sbjct 540236 TCGGTTGGCACGACCCTCTTGCTCGTACTTCTCGTACAACCTTTCGAACTCATCGCCCCA 540295 Query 116693 CAGCCTC-TGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCC 116751 || | || ||| || || || || | || || | ||| ||||| | ||| || Sbjct 540296 CA-CATCGTGA-AGGCCGGGGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCC 540353 Query 116752 TCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCG 116804 || || |||||||| ||||| || || ||||| || || |||| ||||| || Sbjct 540354 TCGACGCGCTTCATAAAGAGATCGGGTATCCACAGGGCGTAGAACAGATCGCG 540406 >seq5516 Length=367667 Score = 136 bits (150), Expect = 5e-27 Identities = 299/437 (68%), Gaps = 12/437 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || ||| |||||| |||||||| ||||| || || || ||| ||||||| Sbjct 269699 GTACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCCAT 269758 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGC-AC-CCCAATCTGTTTGAGGAGA 127348 || | || |||||||| | || | || ||| | || |||||| | || | Sbjct 269759 GAAGTTGAAGGGGTTCTTCGTATTGTAGATC-TTGCCGACGCCCAAT-TCCACCAGCAAG 269816 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 ||||||| ||| |||| ||||||| |||||| || | ||||| ||||||||||| Sbjct 269817 CGATCCGCCACGAACTCGATGTACTGCGACATCAGATCGCAATTCATGCCGATGAGGTT- 269875 Query 127409 CATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGC 127467 || ||| || || || || |||| ||| |||||| |||| || || || |||| Sbjct 269876 CACGGGCAGGGCATCGGTGAGGAACTCCTGTTCAATGGCCACTGCATCTCG---GATGAT 269932 Query 127468 GTGAATAGTGTCCACCC--CAGGTCTATTGCGTAAAGT-CTTGAAGAGTTCCACAGCAAA 127524 | ||| || | | | | || ||| |||| || ||| | ||| ||||| Sbjct 269933 CTCAATGATGCGCTCGCGGCGGGGTCGCTGCACCAAGTGCTGGAACATCAGCACGGCAAA 269992 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || ||| || |||||||| |||||||| || || || |||||| ||| || ||||| Sbjct 269993 GTCGCAGTGAAGGCCCTCGTCTCGGGAGATAAGCTCGTTGGAGAAGGTCAGTCCCGGCAT 270052 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 ||||| |||||||||| ||||||||| | || ||| ||||||||| ||||| Sbjct 270053 CAGACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTC 270112 Query 127645 CACACACGCGAACGCAA 127661 || ||||| |||| Sbjct 270113 GACGGCAGCGAAGGCAA 270129 >seq5325 Length=269097 Score = 125 bits (138), Expect = 9e-24 Identities = 174/241 (72%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 175927 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 175986 ||||||||| ||| | | || || || || ||||| | ||||| || ||||| ||||| Sbjct 224396 ATCTTTGCCGCCCGTCAAGCGAGTACCGAACTGACCGCGCGGCTCCAGCAGATTAATATT 224455 Query 175987 GTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 176045 ||| | ||||| | ||| | |||| || || || || ||| || || || || |||| Sbjct 224456 GTTGGCGCCCACAAAGTTCTGGGCCAGATTAACGATGGTCATCTGC-AGCGAAACCTCAC 224514 Query 176046 CGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCAT 176105 ||||||||||||||||| | || ||||| | ||| || ||| |||||||||| ||| Sbjct 224515 CGTGATGGTAGGCCGACATCTCGGCCACCGAACCCGACAGCTGGGCCACCTTCACCTCTC 224574 Query 176106 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGT 176165 |||| |||| | | |||||| | |||| ||||| | ||| ||||| | |||| Sbjct 224575 GCTTGTCGTTCCTCTTGAAGCAGGTGAACATCACCTTGCGCTGACCCGGCTTCAAACCGT 224634 Query 176166 C 176166 | Sbjct 224635 C 224635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613463234540280