Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq5516 187 4e-42 seq5134 150 3e-31 >seq5516 Length=367667 Score = 187 bits (206), Expect = 4e-42 Identities = 537/812 (66%), Gaps = 28/812 (3%) Strand=Plus/Plus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| |||||||| || |||||||||||||| |||| || || |||||||| ||| Sbjct 269708 CACCTTCTTCTCAAAGAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCCATGAAGTTGAA 269767 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 ||||||||| | ||| ||| | || | || ||||||| | || ||||| Sbjct 269768 GGGGTTCTTCGTATTGTAGATCTTGCCGACGCCCAATTCCACCAGCAAGCGATCCGCCAC 269827 Query 159763 AAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCG 159821 || |||||||| || | ||||| | || || || || || | || | ||||| || | Sbjct 269828 GAACTCGATGTA-CTGCGACATCAGATCGCAATTCATGCCGATGAGGTTCACGGGCAGGG 269886 Query 159822 CTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTT 159881 | || | || ||||||| ||||| | || || || | |||| || || | Sbjct 269887 CATCGGTGAGGAACTCCTGTTCAATGGCCACTGCATCTCGGATGATCTCAATGATGCGCT 269946 Query 159882 CGTACCCCGGCTTGCC-CAAAATGTGGTCCTTAAACAGGAGGCACG-CAAAGTCGCAGTG 159939 || | || | || || | ||| || |||| || |||| ||||||||||||| Sbjct 269947 CGCGGCGGGG-TCGCTGCACCAAGTG---CTGGAACATCAG-CACGGCAAAGTCGCAGTG 270001 Query 159940 CAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACG 159999 || |||||||| || ||||| | ||||||||| | | | || |||||||| | || || Sbjct 270002 AAGGCCCTCGTCTCGGGAGATAAGCTCGTTGGAGAAGGTCAGTCCCGGCATCAGACCGCG 270061 Query 160000 CGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGC 160059 | || ||||| ||||||| || || ||||| || ||||| ||||| ||||| || Sbjct 270062 CTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCGACGGCAGC 270121 Query 160060 AAACGCCACGAGCCTCTCACCAAAAGAGGC---GTTGGTGTCATGGGTCCACCTTTTGGC 160116 || || | || | ||| || ||| ||| |||| | | |||| || Sbjct 270122 GAAGGCAATGATGCGCTCTCCGAAATTGGCCGACTTGGAG---GAGATCCAGGAAAGAGC 270178 Query 160117 CCATTCAGCCTTCTTTGCGATGCA----CGGCATGCGCTCGACGGCGTTAAACAATCTGT 160172 ||| || ||| ||||| | || |||||| ||||| |||||| |||| | Sbjct 270179 CCAGTCCGCC----TTGCGCTTCACAGCCGGCATCGTCTCGATGGCGTTGAACAGGTATT 270234 Query 160173 CCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCA 160232 || ||| | | ||| ||| || | |||||| |||||| || | ||||| Sbjct 270235 CCCGCTGGTGCGGGTCCCGGATGTATGTGTCGATCAGCACACTGTACATCTCCGAGTGCA 270294 Query 160233 CATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCC-AGATACTGCACCTCC 160291 | || || ||||| || || ||| |||||| | |||||| ||| ||| |||||| Sbjct 270295 CGTTCTCCATGGCGATTTGGAAGCCGTAGAAGCAGCGTGCCTCCGTGAT-CTGAACCTCC 270353 Query 160292 TGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCC 160351 || |||| | | |||| || |||| || | || |||| ||| || ||||| ||| Sbjct 270354 TGGCTGAAGCGCTCGACCAGGTTCTCATTTACGATGCCATCGGAGGCGGCGAAGAAGGCC 270413 Query 160352 AACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACG 160411 | |||||| |||||||| || | |||||| | || || | | ||||| |||| | Sbjct 270414 AGCACGTGCGAGATGAAGTGGCGCTCGTCATCCTTCAGGC---GGTGCCAGTCGGTCAGG 270470 Query 160412 TCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 || | || || ||| ||||| ||| | |||| Sbjct 270471 TCCTTGGACAGATCCACCTCCTCCACTGTCCA 270502 >seq5134 Length=897107 Score = 150 bits (166), Expect = 3e-31 Identities = 457/700 (65%), Gaps = 36/700 (5%) Strand=Plus/Plus Query 203832 CCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGT 203891 ||| | | || ||||| |||||||| || || || | || ||| | | | ||| || | Sbjct 539113 CCTGCTTTTTATCCACTGTGAACTGGATAGCATTTGCAGCCGGCTTTGTGCGCAGGTAAT 539172 Query 203892 ACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCA 203951 |||| || || || || || | ||| || | ||| ||||| | ||| || | Sbjct 539173 ACATCCCTGTTTTGAGACCAGCTTTCCAGGAATAAAAGTGTATGGACGTCAGCTTTCCGT 539232 Query 203952 CGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGAT 204011 || || || |||| ||||| || | ||||| || ||||| ||||| | |||||| Sbjct 539233 AATTCGGCTCTGCCACATGAATATTGAACGACTGACTCTGGTCTATGAACGCACCCCGAT 539292 Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTC-- 204069 |||||||||| || || ||| |||| ||| || |||||||| |||||| ||| || Sbjct 539293 CTGCGGCCATTTTAATGGTGGACTTCACCGAGATTTCCCACACGGTCTTGTACAGATCGC 539352 Query 204070 ------TCTGGTGTGTTGAGGC-ACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCA 204122 ||||| | | || | | || || ||| ||||| || | | Sbjct 539353 GAACCTTCTGGGGAATGGACTCGATATTTTG---------GATGGAGCCCCTGCTCGAGA 539403 Query 204123 TCAGTCTCATCCT-CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGG 204181 | | ||| | || | | || || |||||| | ||| | | || |||| || || Sbjct 539404 TGA-TCTGGTTCTTCATGTCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTCAGCAAA 539462 Query 204182 TGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTG 204241 || |||| | | ||| || || || |||||||| | | |||| | | || ||||| Sbjct 539463 TGATGGTTAACCACCTGGAACTCGCCAGACAGCACGCGCCTGGTGTAAATATTTGTGGTG 539522 Query 204242 AATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGA 204301 | || ||||| | ||||||||||| | |||||||| || |||||||||||||||| Sbjct 539523 TAGGGCTCGAAGGATTCGTTGTTGCCCATTATCTGAGCAGTAGAGGCCGTGGGCATGGGA 539582 Query 204302 GCCAGGAGCAGGGAGTTGCGCACACCGT----ATTTTTGGACCCTGCGCTTCAGAGAGGT 204357 || | ||||||||||| || ||||||| || ||||| | |||||| Sbjct 539583 GCGACAAGCAGGGAGTTCCGGACACCGTGCTGCTTGATGGACTC----CTTCAGTTTTTG 539638 Query 204358 CCAGTCGTGCA---TCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTG 204414 |||||| || ||| | || | | | ||||||||||| |||| | || || | Sbjct 539639 CCAGTCCCACAGATTCG---TTGGCTCCTTGTCCCACATGTCGTACTGCAGAATTCCCTT 539695 Query 204415 ACTGACTGGGCTGCCCTTGTACGTCGGATAAGGCTGATC-CTCTTCTGCCAGCTTGCACG 204473 || || |||||||||| ||| || || || || ||| | ||||| | ||| Sbjct 539696 GCTCACGGGGCTGCCCTCGTAGGTTTCGTAGGGTCCTTCGATCTGC-GCCAGTTCGCAGC 539754 Query 204474 AGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTG 204513 ||| ||| |||| ||||| |||||||| || ||||| Sbjct 539755 TGGCTTCCAGGGCGCCGTAGTAGATGGTCTCGAATATCTG 539794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795098217190480