Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3746 149 7e-31 seq4121 147 2e-30 seq5136 136 4e-27 seq5134 98.7 1e-15 >seq3746 Length=358675 Score = 149 bits (164), Expect = 7e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| |||| || |||||| ||||| ||||||||||| || ||||| |||| || Sbjct 174187 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTC 174246 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||||||||| |||| |||||||| || | || | || |||||||||| Sbjct 174247 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTG 174306 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| || | | ||||| | ||||| |||| |||||||| || Sbjct 174307 GATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTT 174366 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || ||||| |||||||||||||| Sbjct 174367 GCCGGTGAGGGTTTTCACAAAGATTTGCAT 174396 >seq4121 Length=254077 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| |||||| ||| |||||| ||||| |||||||| || |||||||| | Sbjct 189962 ACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCC 190021 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||||||||| ||||| |||||||| || | || | | |||||| Sbjct 190022 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTT 190081 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||| | || | | || || | ||| || |||| ||||| Sbjct 190082 GTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCAGAGGGTTCAACCTCCAAAGTGAT 190141 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| ||||| || || || ||||| ||||| Sbjct 190142 GGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 190177 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||| |||||| ||| |||||| ||||| |||||||||||||||||||| | Sbjct 189050 ACGCAGGACCAAATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGATAGAGTGCGTCC 189109 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| |||||||| ||||| |||||||| || | || | | |||||| Sbjct 189110 ATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTT 189169 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||| | || | | || ||| | || || |||| ||||| Sbjct 189170 GTCTTGGATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAAGTGAT 189229 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || || || || ||||| ||||| Sbjct 189230 GGTCTTGCCAGTAAGAGTCTTGACGAAGATCTGCAT 189265 Score = 129 bits (142), Expect = 7e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||||| | ||| | ||||| || | || |||||||||||| || || |||| Sbjct 189721 TGCCTCCTCGAAGACGGAGCACCAAGTGGAGGGTTGACTCCTTTTGGATGTTATAATCGG 189780 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 |||||||||| | || || ||||||||||||||||| ||||| |||||||| || | | Sbjct 189781 ATAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGG 189840 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | |||||||||| |||||| ||| | || | | || ||| | ||| | Sbjct 189841 GGATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGGAGGGTTCGA 189900 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | || ||||| || || ||||| || || || ||||| ||||| Sbjct 189901 CCTCAAGGGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 189949 Score = 123 bits (136), Expect = 3e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| |||||| ||| |||||| ||||| |||||||||||||||||||| | Sbjct 189506 ACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGATAGAGTGCGTCC 189565 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||||||||| |||| |||||||| || | || | | |||||| Sbjct 189566 ATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTT 189625 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||| | | | | || || | || || || | ||||| Sbjct 189626 GTCCTGGATCTTGGCCTTCACGTTTTCGATGGTATCAGAAGGCTCAACCTCGAGGGTGAT 189685 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || |||| || || || ||||| ||||| Sbjct 189686 GGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 189721 Score = 120 bits (132), Expect = 3e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| || || ||||| | ||||| |||| || |||||||| || ||||| Sbjct 190214 CTCCTTCTGGATGTTATAATCGGACAAGGTGCGTCCGTCCTCCAGCTGCTTTCCAGCGAA 190273 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||| || | || | | |||||||||| |||||| ||||| | Sbjct 190274 GATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATT 190333 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| | ||| || |||| |||||||| ||||| |||| || || || Sbjct 190334 CTCGATGGTATCGGAGGGTTCGACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCAC 190393 Query 46582 AAAGATTTGCATTTTG 46597 ||| |||||||||||| Sbjct 190394 AAAAATTTGCATTTTG 190409 >seq5136 Length=173398 Score = 136 bits (150), Expect = 4e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||| | |||| ||| | || ||||| ||||| |||||||||| Sbjct 116801 TGCCTCCGCGGAGACGGAGAACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 116860 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || ||||||||||| |||||||| ||||| ||||||||||| | | Sbjct 116861 ACAGGGTGCGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGG 116920 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | |||||| ||| |||||| ||| | || | | ||| ||| | |||| Sbjct 116921 GAATACCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCCA 116980 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | |||| |||||||| ||||| |||| || || |||||||| ||||| ||| Sbjct 116981 CCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATGTTG 117033 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | ||||| ||||| || |||||| ||||| ||||||||||| Sbjct 114979 CCTCCGCGAAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 115038 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || |||| || || ||||| |||||||| || | |||||||| || | || Sbjct 115039 AGAGTACGTCCGTCCTCCAGTTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGA 115098 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||| ||| |||||| ||| | || | | |||||| | || || Sbjct 115099 ATTCCCTCCTTATCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCGGATGGCTCGACT 115158 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||||||||| || |||| || || || ||||||||||| Sbjct 115159 TCCAGGGTGATGGTTTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 115205 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || |||||||| |||| || || || ||||||||||| Sbjct 116610 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAA 116669 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | | |||||||||| ||| || ||||| | Sbjct 116670 GATCAATCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATTTTAGCCTTGACGTT 116729 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| | || || |||| |||||||||||||| || || || || || Sbjct 116730 TTCAATGGTGTCTGAAGGCTCAACCTCCAGGGTGATGGTTTTGCCAGTGAGGGTCTTCAC 116789 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 116790 AAAGATCTGCAT 116801 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||| | ||| ||||| || || ||||| || || ||||||||| | || || Sbjct 116365 ACCAAATGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGCCCATCTTCA 116424 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| || || ||||| |||||||| || | || | | ||||||||| | Sbjct 116425 AGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGG 116484 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || || | || | | |||||| | || || |||| |||||||| ||| Sbjct 116485 ATTTTGGCTTTTACATTCTCAATTGTGTCGGATGGCTCGACTTCCAGGGTGATGGTCTTG 116544 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||||||| || |||||||| ||||| Sbjct 116545 CCAGTCAGCGTCTTCACAAAGATCTGCAT 116573 Score = 105 bits (116), Expect = 8e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| |||||| || ||||| ||||| |||||||| || ||||| || | Sbjct 115446 ACGCAACACCAAATGCAAAGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCC 115505 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| || ||||| || | |||||||| || | || | | |||||| Sbjct 115506 ATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTT 115565 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||| || ||| | || | | ||| || | || || |||| ||||| Sbjct 115566 GTCTTGGATTTTAGCCTTCACATTCTCAATCGTATCAGAGGGCTCGACCTCCAGGGTGAT 115625 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| || || || || || ||||| ||||| Sbjct 115626 TGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 115661 Score = 96.9 bits (106), Expect = 4e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| || || ||||| ||||| || | || || ||||| || |||||||| Sbjct 115698 CTCCTTCTGGATGTTATAATCGGACAGAGTACGTCCATCTTCAAGCTGTTTTCCGGCGAA 115757 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | | ||||| ||| ||||| ||||| | Sbjct 115758 GATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTATCCTGAATCTTAGCCTTGACGTT 115817 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| | || || || | |||||||| ||||| |||| || || || Sbjct 115818 TTCGATGGTGTCTGAAGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTGAC 115877 Query 46582 AAAGATTTGCATT 46594 |||||||||||| Sbjct 115878 GAAGATTTGCATT 115890 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | |||| ||||| || ||| || ||||| || || ||||| Sbjct 116119 CCTCCACGAAGACGGAGAACCAAGTGCAAAGTGGACTCTTTCTGGATGTTATAATCGGAC 116178 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| || | || || ||||| || ||||| |||||||| || | || Sbjct 116179 AGGGTGCGTCCGTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGGG 116238 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| ||| ||| || ||| | || | | || ||| | ||| || Sbjct 116239 ATTCCTTCCTTATCCTGGATTTTAGCCTTCACATTCTCGATGGTATCGGAGGGTTCGACC 116298 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| ||||||||||| || || || || || |||||||| |||||| Sbjct 116299 TCCAAGGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAGATCTGCATT 116346 >seq5134 Length=897107 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| ||||| || |||||| || || || ||||| || || ||||| | Sbjct 635921 CGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCA 635862 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| |||| |||||||| || | || | | || ||| Sbjct 635861 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 635802 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||| |||| | | | || || | ||| || || | |||||| Sbjct 635801 TCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGAGTGATG 635742 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || |||||||| || || ||||| ||||| ||||| ||| Sbjct 635741 GTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTG 635703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565197893603160