Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq5136 107 1e-18 seq4121 82.4 5e-11 >seq5136 Length=173398 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||| ||||||||| ||||| || || |||||||||| | Sbjct 116119 CCTCCACGAAGACGGAGAACCAAGTGCAAAGTGGACTCTTTCTGGATGTTATAATCGGAC 116178 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | |||| | || ||||||||||| ||| |||| || || ||||||||||| | ||| Sbjct 116179 AGGGTGCGTCCGTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGGG 116238 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || ||||| || | || | | || || | | ||| || Sbjct 116239 ATTCCTTCCTTATCCTGGATTTTAGCCTTCACATTCTCGATGGTATCGGAGGGTTCGACC 116298 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || ||||| || || | || || || ||||||||||| Sbjct 116299 TCCAAGGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAGATCTGCAT 116345 >seq4121 Length=254077 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| ||||| | ||| || ||||| || | || || ||||| || |||||||||| Sbjct 189722 GCCTCCTCGAAGACGGAGCACCAAGTGGAGGGTTGACTCCTTTTGGATGTTATAATCGGA 189781 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | |||| |||| |||| || || ||| | || || |||||||||||||| | ||| Sbjct 189782 TAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 189841 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || || ||||| || || || | || | | || || | | ||| || Sbjct 189842 GATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGGAGGGTTCGAC 189901 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||| || || || || | ||| || |||||||||||||| Sbjct 189902 CTCAAGGGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 189949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347345328960389