Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq5136 127 8e-24 seq5134 102 3e-16 >seq5136 Length=173398 Score = 127 bits (140), Expect = 8e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || || ||||||| || || || |||||||| ||||| | || Sbjct 115890 AATGCAAATCTTCGTCAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTTGAGCCTTC 115831 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||| ||| | || || ||||| ||||||||||||||||| || || || Sbjct 115830 AGACACCATCGAAAACGTCAAGGCTAAGATTCAGGATAAGGAAGGAATTCCCCCAGACCA 115771 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || || || || ||| | || ||||| |||||||||||| | ||| || | |||||||| Sbjct 115770 GCAGCGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGACGTACTCTGTCCGATTATAA 115711 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 115710 CATCCAGAAGGAGTCGACCCTTCACTTGGT 115681 Score = 102 bits (112), Expect = 3e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||||||| || || || || || || || || |||| Sbjct 116573 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCATCC 116514 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | ||| ||||| ||||| ||||| ||||||||||| ||||| Sbjct 116513 GACACAATTGAGAATGTAAAAGCCAAAATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 116454 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| || || | || || || ||||||||||| | ||| | | ||||| || Sbjct 116453 CAGCGTTTGATCTTTGCTGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCTGATTACAAC 116394 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || || || || || Sbjct 116393 ATTCAGAAGGAATCTACCCTCCATTTGGT 116365 Score = 93.3 bits (102), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||||| || || || || || || || ||| | ||| Sbjct 115433 ATGCAGATATTCGTGAAGACTTTGACTGGCAAGACCATCACCCTGGAGGTCGAACCCTCT 115374 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | | || ||||| ||||| ||||| || || || || ||||| Sbjct 115373 GATACCATCGAGAATGTGAAGGCTAAAATCCAAGACAAGGAGGGCATCCCCCCAGATCAG 115314 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| || ||| | || || || |||||||||||| | || | |||| || || Sbjct 115313 CAGCGTTTGATCTTCGCCGGAAAGCAGCTTGAAGATGGACGCACCCTTTCGGACTACAAC 115254 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || | ||||| || Sbjct 115253 ATCCAGAAGGAGTCCACTTTGCACTTGGT 115225 >seq5134 Length=897107 Score = 102 bits (112), Expect = 3e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || |||||||| || || || || || || || |||||||| || ||| | || Sbjct 635707 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCTTCG 635766 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | ||| || ||||| || || |||||||||||||| ||||| Sbjct 635767 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 635826 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || || |||||||| | || | | || ||||| Sbjct 635827 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 635886 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || | ||||| || Sbjct 635887 ATTCAGAAGGAGTCCACTTTGCACTTGGT 635915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975573275457164