Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq4069 104 2e-16 seq5006 87.8 1e-11 >seq4069 Length=229605 Score = 104 bits (114), Expect = 2e-16 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 ||||| ||| |||||||||| ||| || || || ||||| ||| | | || Sbjct 169374 ACATCGAAGGTGCCACCACCCAGATCGAAGATGAGCACATTGCGCTCTCCCTTGAGATTC 169315 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || || || ||||| || || ||||| ||||| ||||| || ||||| | | ||||| Sbjct 169314 TTGTCCAGTCCATAGGCCAAGGCAGCTGCAGTGGGTTCGTTGATAATCCGGAGGACATTC 169255 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 ||||||||||| || ||||| || ||||| || | || || || ||||| || || Sbjct 169254 AGACCAGCAATGGCACCCGCATCCTTGGTGGCCTGGCGCTGGGAGTCATTAAAGTAAGCG 169195 Query 518288 GGAACAGTAATAACGGCATC 518307 || || |||||||| ||||| Sbjct 169194 GGCACTGTAATAACCGCATC 169175 >seq5006 Length=1082855 Score = 87.8 bits (96), Expect = 1e-11 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 518513 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCT 518572 || || || || || || || | ||| || || || || | || | ||||| || || Sbjct 870599 CGCTTGGCGTCGAAGATCGTCTGGGTCGGGTTCATCGCCACCTGGTTCTTGGCGGCGTCG 870658 Query 518573 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 518632 || |||||| | || || || || || | |||||| |||||||| || |||||||| || Sbjct 870659 CCGATCAGACGCTCCGTATCGGTGAAGGCAACATAGGATGGAGTGGTACGATTACCCTGG 870718 Query 518633 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTT 518692 || || || || || || || || |||| || | || || || || | || || Sbjct 870719 TCGTTGGCGATGATCTCGACCTTTCCATGCTGGAACACTCCCACGCACGAGTAGGTGGTG 870778 Query 518693 CCTAAATCAATACCAATAGCA 518713 || ||||||||||||| |||| Sbjct 870779 CCCAAATCAATACCAACAGCA 870799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780537909655498