Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq5134 154 2e-32 seq5097 82.4 9e-11 seq1178 82.4 9e-11 >seq5134 Length=897107 Score = 154 bits (170), Expect = 2e-32 Identities = 813/1276 (64%), Gaps = 33/1276 (3%) Strand=Plus/Plus Query 109398 CGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATG 109457 || ||| | ||| || |||||||| || |||||||||||||| ||||| | || | || Sbjct 539153 CGGCTTTGTGCGCAGGTAATACATCCCTGTTTTGAGACCAGCTTTCCAGGAATAAAAGTG 539212 Query 109458 CATTGAAGAGAG-TTTGGAAAGTGTCGGACTCT-CCATAAACAAGTTCATCGACTGAGAC 109515 || || | || ||| | | |||| |||| ||| | | || | ||||||| | Sbjct 539213 TATGGACGTCAGCTTTCCGTAAT-TCGG-CTCTGCCACATGAATATTGAACGACTGACTC 539270 Query 109516 TGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCC 109575 || || ||||| ||| ||||| || ||||| | ||| | |||| |||||| Sbjct 539271 TGGTCTATGAACGCACCCCGATCTGCGGCCATTTTAATGGTGGACTTCACCGAGATTTCC 539330 Query 109576 CAGACAGTCTTGTACAAATTCTTGATATCATC--GGGAATGTCCACGATGTTTTGAATAG 109633 || || |||||||||| || | || | | || ||||||| | |||| ||||| || | Sbjct 539331 CACACGGTCTTGTACAGAT-CGCGA-ACCTTCTGGGGAATGGACTCGATATTTTGGATGG 539388 Query 109634 AGCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGACCAGAGACCGACCTTTT 109690 |||| || || || |||| | | |||||| || | ||| | | | || Sbjct 539389 AGCC-CCTGC--TCGAGATGATCTGGTTCTTCATGTCGTCGTCCCACAAGTCCAGCTCCG 539445 Query 109691 TGAGATCG-TCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGG 109749 | || || ||| ||| ||| | ||| ||||| || || |||| || ||| | | Sbjct 539446 TTAGGTCCCTCAGCAA-ATGATGGTTAACCACCTGGAACTCGCCAGACAGCACGCGCCTG 539504 Query 109750 AGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTG 109809 ||| || || || |||||||| ||||| | || |||||||| | || || ||||| Sbjct 539505 GTGTAAATATTTGTGGTGTAGGGCTCGAAGGATTCGTTGTTGCCCATTATCTGAGCAGTA 539564 Query 109810 GAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGC 109869 || || |||||||||||||| | || || ||| |||| ||| | | ||| | | Sbjct 539565 GAGGCCGTGGGCATGGGAGCGACAAGCAGGGAGTTCCGGACACCGTGCTGCTTGATGGAC 539624 Query 109870 TCACGCATTGCGTCCCAATCATAACGACCACTAAATT--TAGTCTCACCATCCCACATAT 109927 || || | | ||| || |||| | ||| | | ||| |||||||| | Sbjct 539625 TCCTTCAGTTTTTGCCAGTC-------CCAC-AGATTCGTTGGCTCCTTGTCCCACATGT 539676 Query 109928 CTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAA 109987 | || || | |||| | || |||| | | | ||||| | || || | Sbjct 539677 CGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCCTCGTAGGTTTCGTAGGGTCCTTCGA 539736 Query 109988 CCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAG 110047 || |||| ||| | || || || || | | || || ||||| || || || Sbjct 539737 TCTGCGCCAGTTCGCAGCTGGCTTCCAGGGCGCCGTAGTAGATGGTCTCGAATATCTGCT 539796 Query 110048 CATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAA-AGAATAAACACATCC 110106 |||| ||||| | ||| || | || |||| | | | || ||||| | | || Sbjct 539797 GGTTCAAGAGGCCTGCCTCCTCGCTTTCATAGGGGA-ATCGCATGAGAATCAGGGCGTCA 539855 Query 110107 GCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTC-GAGCAGT 110165 || | ||||||||||||| || | ||||||||| ||| ||| || | || || Sbjct 539856 GCGAATCCCTGAACACCGATGCCCACAGGGCGATGCCTCAAGTTGGA-CTTCTTTGCCTC 539914 Query 110166 TTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGT 110225 | | ||| ||||||||| |||||||| | |||||||| || ||||| ||||| || Sbjct 539915 TGGCAGGGGATAAAAGTTGATGTCGATGATCTTGTTGAGATTTTTGGTCACCGTCTTGGT 539974 Query 110226 GATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAG 110285 | ||| | ||| || | | | || ||| || |||| ||||| | | ||| Sbjct 539975 AACTTCCTTGAGCTTCTTGAAGTCATACG---TCTTCTCGGGTGTGACAAACATATTGAG 540031 Query 110286 AGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTC 110345 || || || || | ||||| || | | |||| || || ||| || | ||||| Sbjct 540032 GGCGATCGAGGCCAAGTTGCAGACGGCAATCTCATCAGGCGAGGAGTACTCGACGATTTC 540091 Query 110346 CGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCA 110405 || ||||||||| | ||| ||| || | |||| ||| || || |||||| Sbjct 540092 GGTGCACAAGTTGCTGCACTTGATGGTGCCGACATTCTGCTGGTTGCTCTTCCGGTTGCA 540151 Query 110406 TGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTT 110465 |||||||| | |||||||| ||| | ||||||||| ||| | || | ||||| Sbjct 540152 GGCATCCTTGAACAGCATGTAGGGGTTCCCAGTTTCCACCTGAGCCTCAATGATGGCGAA 540211 Query 110466 CCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTA 110525 ||| | || || ||| ||| || |||| || | ||||||||| ||| Sbjct 540212 CCAAAGGGACTGAGCCTTCACCGTTCGGTTGGCACGACCCTCTTGCTCGTACTTCTCGTA 540271 Query 110526 CAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAA 110585 ||| || || || | || ||||||| ||| || |||| ||| || | Sbjct 540272 CAACCTTTCGAACTCATCGCCCCACACATCGTGAAGGCCGGGGCATTTGTGGGGGCACAT 540331 Query 110586 GAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGC 110645 ||| ||||||| ||| |||| || | |||||| || || || || ||||||| || Sbjct 540332 GAGCGACCAATCGCCATTGGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCACAGGGC 540391 Query 110646 CGAGAAAAGGTCACGG 110661 |||| || || ||| Sbjct 540392 GTAGAACAGATCGCGG 540407 >seq5097 Length=1247432 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC-GT 136775 ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||| |||| Sbjct 658777 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCGGGTTCGATCCCCTCA 658718 Query 136776 TGGG--AACAGCtttt 136789 |||| |||| ||||| Sbjct 658717 TGGGCCAACAACTTTT 658702 >seq1178 Length=17935 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 40271 GGGCTCATCCGATATCTCCTTAGGCACTGGCATACGACCCCTTTTGAAATGGTCGATTTC 40330 ||||| ||||| || || | ||||| | ||| | | || ||||| ||| || || Sbjct 11971 GGGCTGATCCGCTACCTGATGCGGCACCGCCATTCCTCACCGTTTGAGATGTGTGAGATC 12030 Query 40331 AAGTTTCACATCAAAATGCCCATCTACATCGCACGACAGCACCTTCGGCACCGCACCGCC 40390 ||||||||| ||||| ||||||||| ||| || || ||| |||| ||||| | ||| Sbjct 12031 AAGTTTCACGTCAAACTGCCCATCTTCATTGCCCGGCAGTGGATTCGCCACCGTATGGCC 12090 Query 40391 AGTGTGAATGAGTTGTCTGCTCGTTACTCC 40420 || ||||| || | ||||| || || ||| Sbjct 12091 AGCGTGAACGAATATTCTGCCCGCTATTCC 12120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588933792507400