Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4121 147 5e-30 seq5134 134 3e-26 seq5136 132 1e-25 seq3746 120 7e-22 >seq4121 Length=254077 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| ||||| || || ||||||| ||||| | |||||||| ||||| Sbjct 189746 GTGGAGGGTTGACTCCTTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCCAGCTG 189805 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || || ||||| || || || || ||||| || || || Sbjct 189806 CTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATACCCTCCTTGTCCTGGATCTT 189865 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| |||||||||||||| || || ||| || |||||||||| |||||||| || Sbjct 189866 GGCCTTCACGTTCTCAATGGTATCGGAGGGTTCGACCTCAAGGGTAATGGTCTTTCCGGT 189925 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || ||| || ||||| | ||||| Sbjct 189926 CAGAGTCTTCACGAAGATCTGCAT 189949 Score = 138 bits (152), Expect = 3e-27 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 |||||| |||||||| || || || || ||||||| |||| || | || || || |||| Sbjct 189290 GTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAAG-GTGCGTCCGTCCTCCAGCT 189348 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| || |||||||| || || || || |||||||| || || || ||||| || || | Sbjct 189349 GCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGATCT 189408 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | ||| || ||||||||||| || || || || |||||||||| |||||||| | Sbjct 189409 TGGCCTTCACATTCTCAATGGTATCGGAGGGCTCAACCTCAAGGGTAATGGTCTTTCCGG 189468 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 ||| ||| || ||||| | ||||| Sbjct 189469 TCAGAGTCTTCACGAAGATCTGCAT 189493 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| ||||| || || || ||||| |||| ||||| | ||||| || |||||||| || Sbjct 189068 AGTAGACTCCTTCTGGATGTTGTAGTCGGATAGAGTGCGTCCATCCTCCAGCTGCTTTCC 189127 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 |||||||| | || || || |||||||| || || || |||||||| || || ||| Sbjct 189128 GGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCTTGGATCTTAGCCTT 189187 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 |||||||||||||| || || || || || | || | ||||| || || | ||| Sbjct 189188 CACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAAGTGATGGTCTTGCCAGTAAGAGT 189247 Query 195123 TTTTACGAACACTTGCAT 195140 || ||||| | ||||| Sbjct 189248 CTTGACGAAGATCTGCAT 189265 >seq5134 Length=897107 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | ||||||||| || ||||| || || || | || || | |||||||| ||||| Sbjct 635910 GTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 635851 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || || ||||||||||| ||||||||||| ||||| || Sbjct 635850 CTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTT 635791 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||| || || || || |||||| ||| || ||||| || | ||||| || || Sbjct 635790 GGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGAGTGATGGTCTTGCCCGT 635731 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 635730 GAGGGTCTTAACGAAGATCTGCAT 635707 >seq5136 Length=173398 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || || || ||||| |||||||| | |||||| | ||||||||| |||||| Sbjct 116371 TGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGCCCATCTTCAAGCTGC 116430 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | || || || ||||||||||| || || |||||||| ||||| Sbjct 116431 TTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGGATTTTG 116490 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || |||||||| ||||| || || ||||| ||||| | ||||| || ||| Sbjct 116491 GCTTTTACATTCTCAATTGTGTCGGATGGCTCGACTTCCAGGGTGATGGTCTTGCCAGTC 116550 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| Sbjct 116551 AGCGTCTTCACAAAGATCTGCAT 116573 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| ||||| || || || || ||||| |||| || || | ||||||||||||||| Sbjct 116827 TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCGAGCTGC 116886 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| | ||| || |||||||| ||||| || || || || || || || Sbjct 116887 TTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTATCCTGGATCTTG 116946 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || |||||||| || || ||| ||||| || | ||| | ||||| || ||| Sbjct 116947 GCCTTCACATTCTCAATCGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTC 117006 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || || || | ||||| Sbjct 117007 AAGGTCTTCACAAAGATCTGCAT 117029 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| |||||||| || ||||| ||||| || | |||||| | || || || || || Sbjct 116599 TGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGTCCGTCCTCCAGTTGT 116658 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| | ||| || || ||||| ||||| || || ||||| || ||||| Sbjct 116659 TTGCCGGCGAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATTTTA 116718 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||||||| ||||||||||| ||| || || || ||||| | || || || || Sbjct 116719 GCCTTGACGTTTTCAATGGTGTCTGAAGGCTCAACCTCCAGGGTGATGGTTTTGCCAGTG 116778 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| Sbjct 116779 AGGGTCTTCACAAAGATCTGCAT 116801 Score = 93.3 bits (102), Expect = 9e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| | |||||||||||| || || || ||||||| || || | || || || Sbjct 116136 AACCAAGTGCAAAGTGGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGTCCGTCCTC 116195 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | || || || || ||||| | ||| || || ||||| || || ||||| || || || Sbjct 116196 CAATTGTTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCCTTATCCTG 116255 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| ||| || ||||| ||||| || || ||| || || | ||| | || || Sbjct 116256 GATTTTAGCCTTCACATTCTCGATGGTATCGGAGGGTTCGACCTCCAAGGTGATGGTTTT 116315 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| || | || || || || | |||||| Sbjct 116316 TCCAGTGAGGGTCTTCACAAAGATCTGCATT 116346 >seq3746 Length=358675 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| |||| || || | || || || ||||| Sbjct 174193 GTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGCTG 174252 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || || || || || ||||| || ||||| || || || Sbjct 174253 CTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 174312 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| ||||| |||||||||||| ||||| || | ||| | ||||| || || Sbjct 174313 GGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCGGT 174372 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | |||||| Sbjct 174373 GAGGGTTTTCACAAAGATTTGCAT 174396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109400104069211