Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5136 125 5e-24 seq4121 116 2e-21 seq5134 104 2e-17 seq3746 95.1 8e-15 >seq5136 Length=173398 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 || || |||| |||| || ||||||||||| ||||| ||||| | ||| | || ||| Sbjct 116593 ACTAAATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGTCCGTCCTCC 116652 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||| ||||| || || | ||| ||||| ||| | || | ||||||||||| Sbjct 116653 AGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGG 116712 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || |||||| | | || | || | |||||| || | ||| |||||||| Sbjct 116713 ATTTTAGCCTTGACGTTTTCAATGGTGTCTGAAGGCTCAACCTCCAGGGTGATGGTTTTG 116772 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| |||||||||||||||||||| Sbjct 116773 CCAGTGAGGGTCTTCACAAAGATCTGCAT 116801 Score = 113 bits (124), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| |||| ||| ||| ||||| ||||| ||||| || ||| | ||| |||| || Sbjct 116820 AACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTC 116879 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| |||||||| || || | ||| ||||||||| | || | |||||||| || Sbjct 116880 GAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTATCCTG 116939 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| || || || || |||| || | ||| || || | ||| ||||| Sbjct 116940 GATCTTGGCCTTCAC--ATTCTCAATCGTATCGGAAGGCTCCACCTCCAAGGTGATGGTC 116997 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || || | |||||||||||||||||||| || Sbjct 116998 TTGCCAGTCAAGGTCTTCACAAAGATCTGCATGTT 117032 Score = 105 bits (116), Expect = 4e-18 Identities = 154/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| ||||| || | || ||| ||||| ||||| ||||| ||||| | || |||| Sbjct 115449 CAACACCAAATGCAAAGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATC 115508 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| ||||| || || || || || ||||| ||| | || | ||||||||||| Sbjct 115509 CTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTC 115568 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || || || || || || |||| ||| || ||| || || | ||| || Sbjct 115569 TTGGATTTTAGCCTTCAC--ATTCTCAATCGTATCAGAGGGCTCGACCTCCAGGGTGATT 115626 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || ||||| |||||||| |||||||||||| Sbjct 115627 GTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCATA 115662 Score = 104 bits (114), Expect = 2e-17 Identities = 152/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | ||| || ||||| ||||| |||||||||||| | ||| |||| || Sbjct 115224 AACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGTCCATCTTC 115283 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 115284 AAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCTTG 115343 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 || || || || || || || | ||| || || || || | ||| ||||| Sbjct 115344 GATTTTAGCCTTCAC--ATTCTCGATGGTATCAGAGGGTTCGACCTCCAGGGTGATGGTC 115401 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || | ||||||||| || ||||||||| Sbjct 115402 TTGCCAGTCAAAGTCTTCACGAATATCTGCATA 115434 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || || ||||| |||||||| || || || | ||| |||| || Sbjct 115680 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAATCGGACAGAGTACGTCCATCTTC 115739 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||||||||||| || || | ||| ||||||||| | || | || ||||| || Sbjct 115740 AAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTATCCTG 115799 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| |||||| | | || | || | |||||| || | || ||||| || Sbjct 115800 AATCTTAGCCTTGACGTTTTCGATGGTGTCTGAAGGCTCAACCTCAAGAGTGATGGTCTT 115859 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||||| || ||||| ||||| Sbjct 115860 GCCAGTCAAGGTCTTGACGAAGATTTGCAT 115889 >seq4121 Length=254077 Score = 116 bits (128), Expect = 2e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| |||||||| || || | | | ||| | || ||| Sbjct 189285 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTGCGTCCGTCCTCC 189344 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| || || || || || ||||| ||| | || | ||||||||||| Sbjct 189345 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGG 189404 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | || || |||||| || | ||| ||||| | Sbjct 189405 ATCTTGGCCTTCAC--ATTCTCAATGGTATCGGAGGGCTCAACCTCAAGGGTAATGGTCT 189462 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| || ||||||||||| |||||||||||| Sbjct 189463 TTCCGGTCAGAGTCTTCACGAAGATCTGCATA 189494 Score = 114 bits (126), Expect = 8e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | ||| |||| |||||||| || ||||| || Sbjct 189531 TCCTTCTGGATGTTGTAGTCGGATAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAA 189590 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | ||||||||||| ||||| || ||| | Sbjct 189591 ATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTT 189650 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | |||||| |||| ||| ||||| ||||| || | ||||||||| Sbjct 189651 TCGATGGTATCAGAAGGCTCAACCTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACG 189710 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 189711 AAGATCTGCAT 189721 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || || || |||||||| || || || | ||| |||| ||| Sbjct 189741 ACCAAGTGGAGGGTTGACTCCTTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCC 189800 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 189801 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATACCCTCCTTGTCCTGG 189860 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | || || || || || | ||| ||||| ||| Sbjct 189861 ATCTTGGCCTTCACGTTCTCAATGGTATCGGAGGGTTCGACCTCAAGGGTAATGGTCTTT 189920 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || ||||||||||| |||||||||||| Sbjct 189921 CCGGTCAGAGTCTTCACGAAGATCTGCATA 189950 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| |||||||| || || | | | ||| | || ||| Sbjct 190197 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTGCGTCCGTCCTCC 190256 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| || || || || || ||||| ||| | || | ||||||||||| Sbjct 190257 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGG 190316 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | || || || || || | || ||||| | Sbjct 190317 ATCTTAGCCTTGAC--ATTCTCGATGGTATCGGAGGGTTCGACCTCCAAAGTGATGGTCT 190374 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || || | |||||||||||| || ||||| || Sbjct 190375 TGCCAGTCAAAGTCTTCACAAAAATTTGCATTTT 190408 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | ||| |||| |||||||| |||||||| || Sbjct 189075 TCCTTCTGGATGTTGTAGTCGGATAGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAG 189134 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||| ||| | || | ||||||||||| ||||| || ||| Sbjct 189135 ATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACGTTC 189194 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || || | || ||||| || || || |||||||| || Sbjct 189195 TCAATGGTATCGGATGGCTCGACCTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTGACG 189254 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 189255 AAGATCTGCAT 189265 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| ||||| | ||| | || |||||||| || ||||| || Sbjct 189987 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAG 190046 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||| ||| | || | ||||||||||| ||||| || || || Sbjct 190047 ATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCAC--AT 190104 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | ||| || ||||| || | || ||||| || || || || ||||| | Sbjct 190105 TCTCGATGGTATCAGAGGGTTCAACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTGA 190164 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 190165 CGAAGATCTGCAT 190177 >seq5134 Length=897107 Score = 104 bits (114), Expect = 2e-17 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||||||||||||||| || ||| | || |||| ||| Sbjct 635915 ACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCC 635856 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || ||||| ||| | || | || || ||||| | Sbjct 635855 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGA 635796 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 ||||| |||||| || | ||||| | ||| | || || || | || ||||| Sbjct 635795 ATCTTGGCTTTGAC--AT--TTTCGATAGTATCCGAAGGTTCGACCTCAAGAGTGATGGT 635740 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || |||||||| ||||| || ||||||||||| || Sbjct 635739 CTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 635704 >seq3746 Length=358675 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || ||| | ||| | || ||| Sbjct 174188 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 174247 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || ||||| || | || | ||||||||||| Sbjct 174248 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGG 174307 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| || | ||||| | ||| | ||| || || | ||| ||||| Sbjct 174308 ATCTTGGCCTTGAC--AT--TCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGT 174363 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || ||||| || ||||||||||| ||||| Sbjct 174364 CTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 174396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324610917546024