Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq4069 132 4e-25 seq5136 113 4e-19 >seq4069 Length=229605 Score = 132 bits (146), Expect = 4e-25 Identities = 387/588 (66%), Gaps = 10/588 (2%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||||| || || ||||| || ||||| || || || || || | || |||| || Sbjct 168769 AGCTATTGGAATCGATTTGGGCACCACGTACTCCTGCGTGGGCGTCTTCCAGCATGGAAA 168828 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || || || || || ||||| || || ||| | || || ||||| || || | ||||| Sbjct 168829 GGTGGAGATCATCGCGAATGACCAGGGCAACCGCACCACACCATCCTACGTGGCCTTCAC 168888 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTAC 550167 ||| | || | | |||| || || || || | || | ||| || || || Sbjct 168889 GGACTCGGAGCGCCTGATTGGAGACGCCGCCAAGAACCAGGTGGCCA-TG--AACCCGCG 168945 Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227 ||| | | || ||||| || ||| |||||||| | || || ||||| | | |||| Sbjct 168946 CAACTCGGTCTTCGATGCCAAGCGTCTAATTGGACGCAGATTCGATGATCCCAAGATTCA 169005 Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGA 550287 || || |||||||| ||||| |||| | || || | ||| || || | || || Sbjct 169006 GGAGGACATGAAGCACTGGCCCTTCCGCGTGGTGAACGACAATGGCAAGCCCAAGAT-GA 169064 Query 550288 AGCTACTCATGAAGGATCTGTTAAACAATTTT-CACCAGAACAAATTTCATCTATGGTTT 550346 | | |||| | ||| | ||| | || || | ||| || ||||| | Sbjct 169065 GCGTGGAGTTCAAGGGCGAGCAAAAGAGCTTTGCGCCGGAGGAGATTAGCTCCATGGTGT 169124 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTT-ACGGATGCAGTA 550405 | | || ||||| ||||||| |||| | | || || | | | | |||||| || Sbjct 169125 TGACTAAGATGAAGGAAACAGCTGAAGCTTATCTGGG-CAGCACGGTCAAGGATGCGGTT 169183 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 || || || || || || ||||||||||| || || || || || || ||||| || Sbjct 169184 ATTACAGTGCCCGCTTACTTTAATGACTCCCAGCGCCAGGCCACCAAGGATGCGGGTGCC 169243 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 |||||||| || ||||| || || |||||||| ||||| ||||| ||||| | || ||| Sbjct 169244 ATTGCTGGTCTGAATGTCCTCCGGATTATCAACGAACCCACTGCAGCTGCCTTGGCCTAT 169303 Query 550526 GGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 ||||| || || || | ||| | ||||| |||||||| ||| Sbjct 169304 GGACTGGACAAGAATCTCAAGGGAGAGCGCAATGTGCTCATCTTCGAT 169351 >seq5136 Length=173398 Score = 113 bits (124), Expect = 4e-19 Identities = 159/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||||||||| || | ||| |||||| ||| || ||| |||||||||| ||||| | Sbjct 116355 GAGACGGAGGACCAAATGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCG 116414 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||||||| || || || ||||| || | | |||||||| ||||||||||| || Sbjct 116415 CCCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCCTC 116474 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAG 563434 || ||||| ||||| |||||| ||||||||| || | || || ||| || | Sbjct 116475 CTTGTCTTGGATTTTGGCTTTTACATTCTCAATTGTGTCGGATGGCTCGAC-TTCCAGGG 116533 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | | || || ||||| || || || || || || |||||| Sbjct 116534 TGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATA 116574 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/136 (75%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| || | |||||||| ||| | ||| || || ||||| | ||||| | Sbjct 115672 AGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGG--ATGTTATAATCGGACAGAGTAC 115729 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 | ||||||||| ||||||||||| || || | || ||||| || || |||||||||| Sbjct 115730 GTCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTT 115789 Query 563375 CTTTATCTTGAATTTT 563390 | ||||| ||||| || Sbjct 115790 CCTTATCCTGAATCTT 115805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028992813104170