Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq5503 224 8e-54 seq5134 224 8e-54 >seq5503 Length=77054 Score = 224 bits (248), Expect = 8e-54 Identities = 456/671 (68%), Gaps = 12/671 (2%) Strand=Plus/Plus Query 29725 AAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCC 29784 || || || | || || |||| || || ||| ||| |||||||||| | |||| Sbjct 66252 AAATCCTCGATGTCCTGCACCTGCCGCTTGATCACCAGCTTGGGAAAGGGACGCGGCTTA 66311 Query 29785 CTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGG 29844 | ||| ||||| ||||| || ||||| |||| |||||||| || | ||| |||| | Sbjct 66312 CGCTCCAGCTGCTCTTTCAGGGGCTCCACATGATTTAGGTAGACATGCGTGTCGCCCATG 66371 Query 29845 GTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGA 29904 ||||| ||||| ||||| |||| ||| || || || || || ||||||| ||||| || Sbjct 66372 GTGTGTACAAAGTCTCCTGGTTTTAGACCCGTCACATGGGCGATCATGTGGGTGAGCAGG 66431 Query 29905 GAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGC 29964 | |||| ||||||||| ||||| || || || |||||||| | || |||||| ||| Sbjct 66432 GCGTAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCGCTGGTACAGC 66491 Query 29965 TGACACGAGAGCTCTCCGTCGC-TC------ACGTAAAACTGACACATGGTGTGGCACGG 30017 || || |||||||| ||| ||| || ||||| ||||| || | ||||||||| Sbjct 66492 TGGCAGGAGAGCTCGCCG-CGCGTCTGTGAGACGTAGAACTGGGCCAGGCAGTGGCACGG 66550 Query 30018 AGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC 30077 || || ||||| | | ||| || |||||||| ||| ||||||||||||||| Sbjct 66551 CGGCAGGGCCATCTTGGGTATGTCCAGCGGATTCCAGGCCGACATGATGATGCGCCTGTC 66610 Query 30078 TTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGA 30137 || || ||| |||| ||| | | | ||||||| || | ||| | || Sbjct 66611 CGAGGGATTATTCTTGATAGTGTCGATCACCTGGCGCAGCTGGTCGATGCCCTTGCCGCT 66670 Query 30138 GTAGTCTGCC--CTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTAC 30195 ||| | || | | || || | |||||| || |||||||| | ||||||||| || ||| Sbjct 66671 GTAAT-TGTCGTCGCAGGTGC-CGTACTCCGCCCCGAAATGACGCCACTGGAAGCCATAC 66728 Query 30196 ACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTG 30255 ||||| || ||||| ||| | | | | | | |||| |||||||| || || | | Sbjct 66729 ACCGGGCCGAGGTCGCCCACGGCGCGCTCCGTGTGGCCCAGCTTGTCCAGGAACTCCCGG 66788 Query 30256 GAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAC 30315 | | ||| | |||||||| | || ||| | ||| |||| || || Sbjct 66789 GTGCTGTTCCCATCCCAGATATGAACGTTCTTGGCCTGCAGCAGCTTGGCGTCCGTCTGG 66848 Query 30316 CCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTG 30375 || || ||||| ||||||||||| | || || | ||||| | |||||| || Sbjct 66849 CCAGCCACAAACCAGAGCAGCTCCTCGGCCACCGCGCGGAAGAAGACGCGCTTGGTGGTC 66908 Query 30376 AGGAGGGGAAA 30386 || ||||| || Sbjct 66909 AGCAGGGGGAA 66919 >seq5134 Length=897107 Score = 224 bits (248), Expect = 8e-54 Identities = 456/671 (68%), Gaps = 12/671 (2%) Strand=Plus/Minus Query 29725 AAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCC 29784 || || || | || || |||| || || ||| ||| |||||||||| | |||| Sbjct 890996 AAATCCTCGATGTCCTGCACCTGCCGCTTGATCACCAGCTTGGGAAAGGGACGCGGCTTA 890937 Query 29785 CTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGG 29844 | ||| ||||| ||||| || ||||| |||| |||||||| || | ||| |||| | Sbjct 890936 CGCTCCAGCTGCTCTTTCAGGGGCTCCACATGATTTAGGTAGACATGCGTGTCGCCCATG 890877 Query 29845 GTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGA 29904 ||||| ||||| ||||| |||| ||| || || || || || ||||||| ||||| || Sbjct 890876 GTGTGTACAAAGTCTCCTGGTTTTAGACCCGTCACATGGGCGATCATGTGGGTGAGCAGG 890817 Query 29905 GAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGC 29964 | |||| ||||||||| ||||| || || || |||||||| | || |||||| ||| Sbjct 890816 GCGTAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCGCTGGTACAGC 890757 Query 29965 TGACACGAGAGCTCTCCGTCGC-TC------ACGTAAAACTGACACATGGTGTGGCACGG 30017 || || |||||||| ||| ||| || ||||| ||||| || | ||||||||| Sbjct 890756 TGGCAGGAGAGCTCGCCG-CGCGTCTGTGAGACGTAGAACTGGGCCAGGCAGTGGCACGG 890698 Query 30018 AGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC 30077 || || ||||| | | ||| || |||||||| ||| ||||||||||||||| Sbjct 890697 CGGCAGGGCCATCTTGGGTATGTCCAGCGGATTCCAGGCCGACATGATGATGCGCCTGTC 890638 Query 30078 TTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGA 30137 || || ||| |||| ||| | | | ||||||| || | ||| | || Sbjct 890637 CGAGGGATTATTCTTGATAGTGTCGATCACCTGGCGCAGCTGGTCGATGCCCTTGCCGCT 890578 Query 30138 GTAGTCTGCC--CTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTAC 30195 ||| | || | | || || | |||||| || |||||||| | ||||||||| || ||| Sbjct 890577 GTAAT-TGTCGTCGCAGGTGC-CGTACTCCGCCCCGAAATGACGCCACTGGAAGCCATAC 890520 Query 30196 ACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTG 30255 ||||| || ||||| ||| | | | | | | |||| |||||||| || || | | Sbjct 890519 ACCGGGCCGAGGTCGCCCACGGCGCGCTCCGTGTGGCCCAGCTTGTCCAGGAACTCCCGG 890460 Query 30256 GAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAC 30315 | | ||| | |||||||| | || ||| | ||| |||| || || Sbjct 890459 GTGCTGTTCCCATCCCAGATATGAACGTTCTTGGCCTGCAGCAGCTTGGCGTCCGTCTGG 890400 Query 30316 CCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTG 30375 || || ||||| ||||||||||| | || || | ||||| | |||||| || Sbjct 890399 CCAGCCACAAACCAGAGCAGCTCCTCGGCCACCGCGCGGAAGAAGACGCGCTTGGTGGTC 890340 Query 30376 AGGAGGGGAAA 30386 || ||||| || Sbjct 890339 AGCAGGGGGAA 890329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408589049505209