Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3746 104 2e-17 seq5136 98.7 8e-16 seq4121 96.9 3e-15 >seq3746 Length=358675 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || || || ||||| || || || | || Sbjct 174179 AGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 174238 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || ||||| ||||| ||||||| ||| | ||||||| Sbjct 174239 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATGCCCTCC 174298 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||||||||||| || Sbjct 174299 TTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTG 174358 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || || || | ||||| ||||| || ||||| ||| Sbjct 174359 ATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATGGTG 174400 >seq5136 Length=173398 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || ||| ||| || ||||| ||||| ||||| ||| | || |||| ||| Sbjct 116593 ACTAAATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGTCCGTCCTCC 116652 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || || ||||| || |||| |||||| ||||| | ||||| ||||||||||| Sbjct 116653 AGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGG 116712 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || || | | | ||||| | ||| ||||||| || || ||||| Sbjct 116713 ATTTTAGCCTTGACGTTTTCAATGGTGTCTGAAGGCTCAACCTCCAGGGTGATGGTTTTG 116772 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || ||||| |||||||| Sbjct 116773 CCAGTGAGGGTCTTCACAAAGATCTGCAT 116801 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || || || ||||| ||||||||||| ||| | || | || || Sbjct 116365 ACCAAATGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGCCCATCTTCA 116424 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||| |||| ||||| ||||| | |||| ||||||||||| Sbjct 116425 AGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGG 116484 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||||||| | | | || || | ||| || |||| || || || || Sbjct 116485 ATTTTGGCTTTTACATTCTCAATTGTGTCGGATGGCTCGACTTCCAGGGTGATGGTCTTG 116544 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| || || ||||| |||||||| Sbjct 116545 CCAGTCAGCGTCTTCACAAAGATCTGCAT 116573 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || ||| || || || || ||||| || || || | || | || || Sbjct 116821 ACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCG 116880 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || |||| |||||| || || | ||||| |||||||| || Sbjct 116881 AGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTATCCTGG 116940 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||||||||||| || || || || Sbjct 116941 ATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTG 117000 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || ||||| |||||||| Sbjct 117001 CCAGTCAAGGTCTTCACAAAGATCTGCAT 117029 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| || || || |||||||| || || | || |||| ||| Sbjct 115909 ACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTCC 115968 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || || || || || || || ||||| ||||| | || | ||||||||||| Sbjct 115969 AGTTGTTTGCCAGCGAAGATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCTTGG 116028 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| |||||| | | | || || | ||| || |||| || || || ||| Sbjct 116029 ATCTTGGCCTTTACATTCTCGATGGTGTCGGATGGCTCGACTTCCAGGGTGATGGTCTTT 116088 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || || || |||||||| Sbjct 116089 CCGGTCAAAGTCTTCACGAAGATCTGCAT 116117 >seq4121 Length=254077 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| | || ||| || || || ||||| || |||||| | || Sbjct 189504 AGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGATAGAGTGCGT 189563 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| ||||| | ||| | |||||| Sbjct 189564 CCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGGATTCCCTCC 189623 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||| ||||| | || Sbjct 189624 TTGTCCTGGATCTTGGCCTTCACGTTTTCGATGGTATCAGAAGGCTCAACCTCGAGGGTG 189683 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| |||||||| || || || |||||||| Sbjct 189684 ATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 189721 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| ||||| || || ||||| |||||| | || Sbjct 189732 AGACGGAGCACCAAGTGGAGGGTTGACTCCTTTTGGATGTTATAATCGGATAGAGTGCGT 189791 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || |||| ||||| ||||| | ||| | |||||| Sbjct 189792 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATACCCTCC 189851 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | || ||||| | ||| Sbjct 189852 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGGAGGGTTCGACCTCAAGGGTA 189911 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| |||| ||| || || || |||||||| Sbjct 189912 ATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 189949 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || ||| ||| || || || || ||||| || | | || Sbjct 189276 AGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTGCGT 189335 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| || || || ||||| ||||| ||||| | || | |||||| Sbjct 189336 CCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCCCTCC 189395 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | ||| Sbjct 189396 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAGGGCTCAACCTCAAGGGTA 189455 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| |||| ||| || || || |||||||| Sbjct 189456 ATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 189493 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || ||| ||| || || || || ||||| || | | || Sbjct 190188 AGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTGCGT 190247 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| || || || ||||| ||||| ||||| | || | |||||| Sbjct 190248 CCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCCCTCC 190307 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | || ||||||| || Sbjct 190308 TTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGGTTCGACCTCCAAAGTG 190367 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||||||| || |||||||| ||||| Sbjct 190368 ATGGTCTTGCCAGTCAAAGTCTTCACAAAAATTTGCAT 190405 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| | || ||| || || || ||||| ||||| ||| | || Sbjct 189960 AGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGT 190019 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || |||| ||||| ||||| | || | |||||| Sbjct 190020 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCC 190079 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | || ||||||| || Sbjct 190080 TTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCAGAGGGTTCAACCTCCAAAGTG 190139 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| || || || || |||||||| Sbjct 190140 ATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 190177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380910983532759