Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq5134 331 2e-85 seq5516 306 7e-78 seq5059 87.8 3e-12 >seq5134 Length=897107 Score = 331 bits (366), Expect = 2e-85 Identities = 1124/1723 (65%), Gaps = 56/1723 (3%) Strand=Plus/Plus Query 212703 GACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGG 212762 |||||||||||||||||||| | ||| || |||||||| | ||| | || Sbjct 539262 GACTGACTCTGGTCTATGAACGCACCCCGATCTGCGGCCATTTTAATGGTGGACTTCACC 539321 Query 212763 GAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCT-CTGGGAAGCCGGG--GATG 212819 |||| ||||||||||||||| | | || | | ||| ||||| | | ||| Sbjct 539322 GAGATTTCCCACACGGTCTTGTACAGATC---GCGAACCTTCTGGGGAATGGACTCGATA 539378 Query 212820 TTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCC 212879 || || | || |||||| | | | ||| |||||| |||| ||| | | || Sbjct 539379 TTTTGGATGGAGCCCCTGCTCGAGATGATCTGGTTCTTCATGTCGTCGTCCCACAAGTCC 539438 Query 212880 CTGGTCTCC---AGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGC 212936 |||| ||| | | | || ||| |||| || | |||||| || || || ||| Sbjct 539439 AG---CTCCGTTAGGTCCCTCAGCAAATGATGGTTAACCACCTGGAACTCGCCAGACAGC 539495 Query 212937 ACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATC 212996 || | ||| ||||| |||| ||||||||||||| | |||||||| |||| ||| Sbjct 539496 ACGCGCCTGGTGTAAATATTTGTGGTGTAGGGCTCGAAGGATTCGTTGTTGCCCATTATC 539555 Query 212997 TGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCG 213056 || ||||| ||| |||||||||||||| || || || ||||| || ||||||| Sbjct 539556 TGAGCAGTAGAGGCCGTGGGCATGGGAGCGACAAGCAGGGAGTTCCGGACACCGTGCTGC 539615 Query 213057 CCGATGAGGCGCCGA-AGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCAC 213115 |||| | | || || | | ||||||||| |||| || | ||||| Sbjct 539616 TTGATG-GACTCCTTCAGTTTTTGCCAGTCCCA-----CAGATTCGTTGGC-TCCTT--- 539665 Query 213116 GTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTA 213175 || ||||||||| |||||| || || ||||||||||||||||||| ||| | ||| Sbjct 539666 GTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCCTCGTAGGTTTCGTA 539725 Query 213176 GGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTC 213235 ||| || | || ||||| |||||| || | |||||| ||||||||||||| || Sbjct 539726 GGGTCCTTCGATCTGCGCCAGTTCGCAGCTGGCTTCCAGGGCGCCGTAGTAGATGGTCTC 539785 Query 213236 AAATATCTCCCTGTT---GAG--CTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATG 213290 ||||||| | ||| ||| || | | |||| | | | | ||| ||| |||| Sbjct 539786 GAATATCTGCTGGTTCAAGAGGCCTGCCT--CCTC-GCTTTCAT-AGGGGAATCG-CATG 539840 Query 213291 CGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTA 213350 | | | ||||| | ||||| || |||||||| | || | || |||| ||| Sbjct 539841 AGAATCAGGGCGTCAGCGAATCCCTGAACACCGATGCCCACAGGGCGATGCCTCAAGTTG 539900 Query 213351 GACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGG 213410 ||||| ||| || ||| ||||||||| |||||||||||||||||| || | Sbjct 539901 GACTTCTTTGCCTCTGGCAGGGGATAAAAGTTGATGTCGATGATCTTGTTGAGATTTTTG 539960 Query 213411 GTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGC 213470 || || ||||| || | || | || ||| | |||| | | | || Sbjct 539961 GTCACCGTCTTGGTAACTTCCTTGAGCTTCT--TGAAGTCATACGTCTTCTCGGGTGTG- 540017 Query 213471 ACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTG 213530 |||||| | |||||||| ||||| |||||| ||||| | ||| | || | | Sbjct 540018 ACAAACATATTGAGGGCGATCGAGGCCAAGTTGCAGACGGCAATCTCATCAGGCGAGGAG 540077 Query 213531 TACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTT 213590 ||||| | ||| |||||||||| ||||||||| ||||||||| | ||||| ||||| Sbjct 540078 TACTCGACGATTTCGGTGCACAAGTTGCTGCACTTGATGGTGCCGACATTCTGCTGGTTG 540137 Query 213591 GACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGAC 213650 ||| |||| | ||||||| | |||||||||||| ||| || || | ||| | | Sbjct 540138 CTCTTCCGGTTGCAGGCATCCTTGAACAGCATGTAGGGGTTCCCAGTTTCCACCTGAGCC 540197 Query 213651 ACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTA 213710 | | || | ||| ||| || ||||| ||| || || || || | Sbjct 540198 TCAATGATGGCGAACCAAAGGGACTGAGCCTTCACCGTTCGGTTGGCACGACCCTC--TT 540255 Query 213711 GCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGA 213770 || ||||||| ||||| | | | ||| || | |||||| || || || || || Sbjct 540256 GC-TCGTACTTCTCGTACAACCTTTCGAACTCATCGCCCCACACATCGTGAAGGCCGGGG 540314 Query 213771 CAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGG 213830 || ||| |||||||| ||| || || | | ||| | || ||| || || Sbjct 540315 CATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCGACGCGCTTCATAAAGAGA 540374 Query 213831 TCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTT 213890 || || | |||||| ||| |||||| || | || | |||| ||| || | ||| Sbjct 540375 TCGGGTATCCACAGGGCGTAGAACAGATCGCGGGCGCGGTTCTCCTCCTTGCCGGTGTTC 540434 Query 213891 TTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAG 213950 || ||| || || || ||||||| ||||| |||||| ||||||| ||| ||||||||| Sbjct 540435 TTCTTCAGTTCCAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAG 540494 Query 213951 GCGCCCGGCCTCTT---GCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGC 214007 ||||| || | ||| ||||||||| ||||| | ||||| ||||||||| | | Sbjct 540495 GCGCCGGGACGCTTGCCGCCGCCCTGATCCACATAACGTGCCACATTGTTGAAGACCCTC 540554 Query 214008 AGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCC 214067 || | ||| || || || ||||| ||||| || || || | | ||| ||| Sbjct 540555 AGCATGGGAACGAGGCCATTGGAGGTGCCGTTCGTGCCGCAAATCGAGGTGCCCTTCGCC 540614 Query 214068 CTCAGGTTGCTCATGGA----GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCA 214123 | || ||| |||| ||||| ||||| || || |||| |||||||||||||| Sbjct 540615 C---GGATGC-AGTGGACATTTAGCCCGATGCCGCCAGCCGACTTCGAGATCATGGCGCA 540670 Query 214124 GCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCA 214183 || ||| | || | ||||| | ||| ||| | || | | | || | ||| || Sbjct 540671 CTGCTCCACGGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTGAGGAGGAAACA 540730 Query 214184 GCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCAT 214243 || ||||| |||| || | ||| | ||||| ||||| |||||| | | Sbjct 540731 CGAGGACAGCTGCGGCCGATTCGTGGCAGCGGCAAAAAGTGTGGGCGACGCATGGGTGAA 540790 Query 214244 AAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGAT 214303 | | || | ||| | || || |||| | ||| ||| || | | ||| || Sbjct 540791 GTAACGCTCCGACAAGAGATTATACGTTTCCACGGCTGCATCGATATCCTCCCCGTGTAT 540850 Query 214304 CTGTAGAGCGCAC-CTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTT--TGGGGCC 214360 | || ||| | ||||||||||||||| || | ||| | | ||| | | Sbjct 540851 TCCGATCGC-CACGCGCATCAGCATGTGCTGCGGGCGCTC--GGCGATCTTGCCGTTTCT 540907 Query 214361 CTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403 ||| |||| ||||| || || || |||||||||||||||||| Sbjct 540908 CTTCAGCAAATAGGAACGTTCGAGGGTCTTGAACCCAAAGTAG 540950 >seq5516 Length=367667 Score = 306 bits (338), Expect = 7e-78 Identities = 566/822 (69%), Gaps = 9/822 (1%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| | |||||||||||||| ||||| || |||| |||||| |||| Sbjct 269696 CTGGTACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCGTCCAGCGAGATCATCTC 269755 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTC-AGGCCCATCTGTTCCAGCA 47957 ||||||| ||||||||| || || || | | || | | ||||| | |||||| Sbjct 269756 CATGAAGTTGAAGGGGTTCTTCGTATTGTAGATCT-TGCCGACGCCCAATTCCACCAGCA 269814 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | ||||||| ||| |||||||||| | ||||| || | |||||||| |||||| Sbjct 269815 AGCGATCCGCCACGAACTCGATGTACTGCGACATCAGATCGCAATTCATGCCGATGAGGT 269874 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 |||||||| || | ||||| ||||||| || || ||| || || | | |||| Sbjct 269875 TCACGGGCAGGGCATCGGTGAGGAACTCCTGTTCAATGGCCACTGCATCTCGGATGATCT 269934 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGC-AGGTGCTTGGCATAGAGCATGCA-GGC 48135 | | ||| | | | ||| | | ||| | | ||||| | | | || ||| ||| Sbjct 269935 CAATGATGCGCT-CGCGGCGGGGTCGCTGCACCAAGTGCTGGA---ACATCA-GCACGGC 269989 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| | ||| | ||| ||||| ||| ||| ||| ||||||||||| || || || Sbjct 269990 AAAGTCGCAGTGAAGGCCCTCGTCTCGGGAGATAAGCTCGTTGGAGAAGGTCAGTCCCGG 270049 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | || | || || ||||||||||| | ||||| ||| |||||||||||| Sbjct 270050 CATCAGACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCC 270109 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 ||| || || ||||| || ||| | |||||||||| || |||| |||||||| Sbjct 270110 CTCGACGGCAGCGAAGGCAATGATGCGCTCTCCGAAATTGGCCGACTTGGAGGAGATCCA 270169 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 |||||| |||||||| ||||| ||| | ||||||||||| ||||| ||| || Sbjct 270170 GGAAAGAGCCCAGTCCGCCTTGCGCTTCACAGCCGGCATCGTCTCGATGGCGTTGAACAG 270229 Query 48376 CTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGA 48435 | | | || | |||| | || || || |||| ||||||||| || Sbjct 270230 GTATTCCCGCTGGTGCGGGTCCCGGATGTATGTGTCGATCAGCACACTGTACATCTCCGA 270289 Query 48436 GTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCAC 48495 |||||| ||||| || ||||| ||||| ||||||||| | ||||| | ||| || Sbjct 270290 GTGCACGTTCTCCATGGCGATTTGGAAGCCGTAGAAGCAGCGTGCCTCCGTGATCTGAAC 270349 Query 48496 TTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAA 48555 || | ||| | ||| | ||| |||||||| || || ||||| || || || ||||| Sbjct 270350 CTCCTGGCTGAAGCGCTCGACCAGGTTCTCATTTACGATGCCATCGGAGGCGGCGAAGAA 270409 Query 48556 GGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTAC 48615 ||| || || || | ||| |||||||||| | | || | |||| | | Sbjct 270410 GGCCAGCACGTGCGAGATGAAGTGGCGCTCGTCATCCTTCAGGCGGTGCCAGTCGGTCAG 270469 Query 48616 GTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 ||| ||| ||| ||||| || ||||| |||||||| || || Sbjct 270470 GTCCTTGGACAGATCCACCTCCTCCACTGTCCAGAAAGAGGC 270511 >seq5059 Length=267503 Score = 87.8 bits (96), Expect = 3e-12 Identities = 154/223 (69%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 241401 GGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACG 241460 |||| |||||| || |||| ||| || || |||||||| |||||| || | Sbjct 248671 GGCA-ATGTGCTCCATCACCTGCTGCTTCAGCTGGGCCACATGGTCCTTGAGGTTCTTCA 248729 Query 241461 CGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCG 241520 || | || ||| | |||| || |||||| | ||| || ||||||||| | Sbjct 248730 CGATGCTGCCCAGATCGACGTTCTCGCCCTTGAGGATCTTGACGCGGTCCTCCAGCTTGG 248789 Query 241521 CGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCT 241580 |||||| ||||| |||||| |||||| |||| ||| |||| |||||| || | |||| Sbjct 248790 AGATGCGCTCCAGCTTGCGCTTGCGGCACTTGGAGGCGGCCACGCGGTTGCGCTGCCTCT 248849 Query 241581 TACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGG 241623 | || ||| |||||| ||||| ||||||||||| || Sbjct 248850 TGCGCTCCAGCTTGATCTTCTCCTGCGTTTCCATGTCGATGGG 248892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931466044030720