Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq5516 181 2e-40 seq5134 168 1e-36 >seq5516 Length=367667 Score = 181 bits (200), Expect = 2e-40 Identities = 528/815 (65%), Gaps = 13/815 (2%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAA 25571 |||||| | || ||| | |||||| |||||||| || || |||| || || | Sbjct 270503 CTGGACAGTGGAGGAGGTGGATCTGTCCAAGGACCTGACCGACTGGCACCGCCTGAAGGA 270444 Query 25572 AGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGT 25631 ||||||| || || || | ||||| |||| ||||| || ||||| ||||| || || Sbjct 270443 TGACGAGCGCCACTTCATCTCGCACGTGCTGGCCTTCTTCGCCGCCTCCGATGGCATCGT 270384 Query 25632 GAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTT 25691 || ||||| ||| |||| | |||| | ||| || ||| | |||||| || || Sbjct 270383 AAATGAGAACCTGGTCGAGCGCTTCAGCCAGGAGGTTCAGATCACGGAGGCACGCTGCTT 270324 Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT 25751 |||||| ||||| || ||||| || || |||||||| ||| |||| || | ||||| Sbjct 270323 CTACGGCTTCCAAATCGCCATGGAGAACGTGCACTCGGAGATGTA---CAGTGTGCTGAT 270267 Query 25752 G---ACGTACATTACAGACGTCGC-CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACA 25807 || ||||| ||| ||| | || | || ||||| ||||||||| | Sbjct 270266 CGACACATACATCCGGGACC-CGCACCAGCGGGAATACCTGTTCAACGCCATCGAGACGA 270208 Query 25808 TACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTA 25867 | || | ||| | |||||| ||||| | |||||| | | || || | Sbjct 270207 TGCCGGCTGTGAAGCGCAAGGCGGACTGGGCTCTTTCCTGGATCTCCTCCAAGTCGGCCA 270148 Query 25868 CGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGT 25927 || || ||||| | | ||||| ||||| || ||||||||||| |||||||| | Sbjct 270147 ATTTCGGAGAGCGCATCATTGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCAGCT 270088 Query 25928 TTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACG 25987 | || |||| |||||||| ||| || || ||||| || ||| ||| ||||||| Sbjct 270087 TCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGACTGACCTTCTCCAACG 270028 Query 25988 AGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCC 26047 |||| ||| | | |||||||| || ||| | || |||||| ||| | | | | | Sbjct 270027 AGCTTATCTCCCGAGACGAGGGCCTTCACTGCGACTTTGCCGTGCTGATGTTCCAG---C 269971 Query 26048 ACTTGCTCCACAAACCTTCTCAAGAGACCGTC-TACAGTATCATCAAAGAGGCTGTGGAG 26106 ||||| | || ||| | ||| | || | || |||||| ||| || |||| Sbjct 269970 ACTTGGTGCAGCGACCCCGCCGCGAGCGCATCATTGAG-ATCATCCGAGATGCAGTGGCC 269912 Query 26107 ATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA 26166 || || ||||||| | | |||||||| | Sbjct 269911 ATTGAACAGGAGTTCCTCACCGATGCCCTGCCCGTGAACCTCATCGGCATGAATTGCGAT 269852 Query 26167 CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCC 26226 || ||| || ||||| |||| ||||| || | ||||| | |||| ||| | Sbjct 269851 CTGATGTCGCAGTACATCGAGTTCGTGGCGGATCGCTTGCTGGTGGAATTGGGCGTCGGC 269792 Query 26227 AGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAG 26286 | |||||| |||| ||||| ||| |||| ||||| | || ||| |||| || ||| Sbjct 269791 AAGATCTACAATACGAAGAACCCCTTCAACTTCATGGAGATGATCTCGCTGGACGGCAAG 269732 Query 26287 ACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||||||||| |||| ||| ||||| || || Sbjct 269731 ACCAACTTCTTTGAGAAGAAGGTGGGCGAGTACCA 269697 >seq5134 Length=897107 Score = 168 bits (186), Expect = 1e-36 Identities = 731/1143 (64%), Gaps = 40/1143 (3%) Strand=Plus/Plus Query 221508 CGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCG 221567 |||| || | |||||| || ||||| || | || | || ||| |||||| | Sbjct 539851 CGTCAGCGAATCCCTGAACACCGATGCCCACAGGGCGATGCCTCAAGTTGGACTTCTTTG 539910 Query 221568 CTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGAT-GACT 221626 | ||||||| |||||||||||||| |||||| | |||||||| || || | | || Sbjct 539911 CCTCTGGCAGGGGATAAAAGTTGATGTCGATGATCTTGTTGAGATTTTTGGTCACCGTCT 539970 Query 221627 T--TAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGG 221684 | |||| ||| | ||||||| |||| | || ||| | ||| Sbjct 539971 TGGTAACTTCCTTG---AGCTTCT------TGAAGTCATAC--------GTCTTCTCGGG 540013 Query 221685 GTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGT 221744 | ||||| || ||||| | ||||| ||| || ||||| | ||| || Sbjct 540014 TGTG-ACAAACATATTGAGGGCGATCGAGGCCAAGTTGCAGACGGCAATCTCATCAGGCG 540072 Query 221745 TGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGT 221804 || |||| | ||| || || || | |||||||||||||||||| || | | | | Sbjct 540073 AGGAGTACTCGACGATTTCGGTGCACAAGTTGCTGCACTTGATGGTGCCGACATTCTGCT 540132 Query 221805 GATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCT 221864 | || ||| || ||| || |||||| | ||||| |||| ||||| |||| || Sbjct 540133 GGTTGCTCTTCCGGTTGCAGGCATCCTTGAACAGCATGTAGGGGTTCCCAGTTTCCACCT 540192 Query 221865 GAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCC 221923 ||||| | | || | ||| || ||| || ||||||| | ||| | |||| Sbjct 540193 GAGCCTCAATGATGGCGAACCAAAGGGA-CTGAGCCTTCACCGTTCGGTTGGCACGACCC 540251 Query 221924 TCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGG 221983 || || | | | || || | | | || |||| || || || | |||| ||| Sbjct 540252 TCTTGCTCGTACTTCTCG---TACAACCTTTCGAACTCATCGCCCCACACATCGTGAAGG 540308 Query 221984 CCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATG 222043 || || || || ||| ||||| || ||| | ||| | | ||| | || ||| Sbjct 540309 CCGGGGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCGACGCGCTTCATA 540368 Query 222044 AAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCG 222103 ||||| || || |||||||| || | || ||||| | || || | ||||||| |||| Sbjct 540369 AAGAGATCGGGTATCCACAGGGCGTAGAACAGATCGCGGGCGCGGTTCTCCTCCTTGCCG 540428 Query 222104 TTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACG 222163 |||| ||| |||| |||| |||||||| | ||| | |||||| |||||||| || | | Sbjct 540429 GTGTTCTTCTTCAGTTCCAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCCAGGTAAATG 540488 Query 222164 GCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAG 222223 || | |||||||| |||||| ||| ||||||||||| | ||| | ||||||| Sbjct 540489 GCAAAGGCGCCGGGACGCTTGCCGCCGCCCTGATCCACATAACGTGCCACATTGTTGAAG 540548 Query 222224 ATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCG 222283 | | || | || || || || ||||| ||||| ||||| ||| | | || Sbjct 540549 ACCCTCAGCATGGGAACGAGGCCATTGGAGGTGCCGTTCGTGCCGCAAATCGAGGTGCCC 540608 Query 222284 CCGGCCCTCAGGTTACTGG-CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGC 222342 |||| | | | ||| || | ||||| || || || |||||||||||||| Sbjct 540609 TTCGCCCGGATG-CAGTGGACATTTAGCCCGATGCCGCCAGCCGACTTCGAGATCATGGC 540667 Query 222343 GCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAA 222402 ||| || | | | | |||||||| || ||||| || | | | | || || || Sbjct 540668 GCACTGCTCCACGGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTGAGGAGGAA 540727 Query 222403 ACAAGACGACATCTGAG---ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTG 222459 ||| || |||| ||| | || |||| | ||| ||| || ||||| || || Sbjct 540728 ACACGAGGACAGCTGCGGCCGATTCGTGGCA---GCGGCAAAAAGTGTGGGCGACGCATG 540784 Query 222460 TGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCC 222519 || ||||| | | |||| |||| ||||| || ||| || |||| | ||||| Sbjct 540785 GGTGAAGTAACGCTCCGACAAGAGATTATACGTTTCCACGGCTGCATCGATATCCTCCCC 540844 Query 222520 GTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGACCCTTGGA 222579 ||| || || || | ||| ||||| ||| || | ||| | || |||| Sbjct 540845 GTGTATTCCGATCGCCACGCGCATCAGCATGTGCTGCGGGCGCTCGGC--GA-TCTTGCC 540901 Query 222580 G---CTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAA 222636 | || |||| || || ||| || ||||||||||||||||||||| |||| Sbjct 540902 GTTTCTCTTCAGCAAATAGGAACGTTCGAGGGTCTTGAACCCAAAGTAGTTGTACCCAAA 540961 Query 222637 GTC 222639 ||| Sbjct 540962 GTC 540964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928778236659520