Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5134 120 2e-21 seq5006 113 3e-19 seq5136 111 1e-18 seq4069 107 1e-17 seq4121 104 2e-16 >seq5134 Length=897107 Score = 120 bits (132), Expect = 2e-21 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| |||| || || | | |||||| || ||||| ||||| || || ||||| || Sbjct 635885 TTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGC 635826 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| |||||||||||||| ||||| |||||||| ||||||| ||| |||||||| Sbjct 635825 TGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCC 635766 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || || || || || ||||| ||||||||||| || || Sbjct 635765 GAAGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTG 635710 >seq5006 Length=1082855 Score = 113 bits (124), Expect = 3e-19 Identities = 359/548 (66%), Gaps = 8/548 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| || || | || | || |||| || || | Sbjct 870794 TTGGTATTGATTTGGGCACCACCTACTCGTGCGTGGGAGTGTTCCAGCATGGAAAGGTCG 870735 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || || ||||| ||||| |||||| | || || ||||| |||||| | || || || | Sbjct 870734 AGATCATCGCCAACGACCAGGGTAATCGTACCACTCCATCCTATGTTGCCTTCACCGATA 870675 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | ||| || || || || || || | || | || || || | || | Sbjct 870674 CGGAGCGTCTGATCGGCGACGCCGCCAAGAACCAGGTGGCGATGAACCCGACCCAGACGA 870615 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || || || || | |||| || || || || || || || | ||||| || || | Sbjct 870614 TCTTCGACGCCAAGCGCCTGATCGGCCGCAAGTTCGAGGACTCCGCCGTCCAGTCGGACA 870555 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630 || || ||||| || ||||| | | | | ||| || || | || || | | | Sbjct 870554 TGAAGCACTGGCCCTTCGAGGTGGTCAGCGCCGATGGCAAGCCCAAGATCGAGGTGACCT 870495 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || | || || || ||||| | |||| Sbjct 870494 ACAAGGACGAG-AAGAAGACCTTCTTC-CCCGAGGAGATCTCCTCGATGGTGCTGACCAA 870437 Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 ||||| | |||| |||| | || | ||| ||||| || || |||| || || || Sbjct 870436 GATGAAGGAGACCGCCGAG-GCCTA-CCTGGGCAAGACTGTGACCAATGCGGTCATCACC 870379 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || || || || || || || ||||| || || || ||||| |||| || || Sbjct 870378 GTGCCCGCTTACTTCAACGACTCGCAGCGTCAGGCTACCAAGGATGCCGGAACCATCGCC 870319 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||||| || || | || || || || || || || || || || | || || ||||| Sbjct 870318 GGTCTGAACGTGCTGCGCATCATCAACGAGCCCACGGCCGCTGCCATCGCCTACGGTCTG 870259 Query 474869 GATAAGAA 474876 || ||||| Sbjct 870258 GACAAGAA 870251 >seq5136 Length=173398 Score = 111 bits (122), Expect = 1e-18 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| ||||| | | ||| ||||| ||||||||||| ||||| ||||| || Sbjct 115483 TTGTAGTCAGAAAGAGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGC 115542 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| || || ||||| ||||||||||| || || || ||| ||||| |||||| Sbjct 115543 TGATCTGGGGGGATTCCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCAATCGTATCA 115602 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | || ||||| || ||||| |||||||| ||||| ||||| || || Sbjct 115603 GAGGGCTCGACCTCCAGGGTGATTGTTTTGCCGGTGAGGGTCTTCACGAAGATCTG 115658 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || | ||| || ||| ||| || || || ||||||| ||||| Sbjct 116352 ACGGAGACGGAGGACCAAATGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGAAAGAGT 116411 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||||||||| ||||| |||||||| || | ||| || ||||| ||||||||||| Sbjct 116412 GCGCCCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCC 116471 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||| || || ||| ||| ||||| || || | || | | ||| | Sbjct 116472 CTCCTTGTCTTGGATTTTGGCTTTTACATTCTCAATTGTGTCGGATGGCTCGA-CTTCCA 116530 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || || || || ||||| || || || || Sbjct 116531 GGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTG 116570 >seq4069 Length=229605 Score = 107 bits (118), Expect = 1e-17 Identities = 254/381 (67%), Gaps = 2/381 (1%) Strand=Plus/Plus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 ||||| ||||| || || || ||||||||||| |||| || || ||| | || || | | Sbjct 169847 AATCCGGATGAGGCGGTGGCCTATGGAGCTGCCATCCAGGCGGCCATTCTCTC-GGGCGA 169905 Query 475853 TCAGACGAG-AAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCT 475911 ||| || | | || || | | || || || || ||||||| ||| | || | Sbjct 169906 CGAGAGCAGTCAGATCAAGGATGTCCTGCTCGTGGATGTGGCTCCACTCTCACTCGGAAT 169965 Query 475912 TGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAA 475971 ||||| | || || | ||||| || || || || | |||| || ||||| ||||| Sbjct 169966 CGAAACCGCCGGCGGTGTGATGACCAAGCTGATCGAGCGGAATAGTCGCATCCCCTGCAA 170025 Query 475972 AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTT 476031 | || || || |||| || | || || || | | || |||||||| | || Sbjct 170026 GCAGTCCAAGACCTTCACCACCTACGCGGACAACCAGCCGGCGGTTACCATCCAGGTTTT 170085 Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 || || || ||| | || || || |||||| || || | || || || || Sbjct 170086 CGAGGGCGAGAGAGCTCTGACCAAGGACAATAACGTGCTGGGCAACTTCAACCTGACGGG 170145 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 ||||| || |||||||| |||||||| | || || || || |||||| | ||||| || Sbjct 170146 CATTCCGCCGGCTCCCAGGGGAGTTCCCAAGATCGATGTCACCTTTGATTTGGATGCCAA 170205 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||| || || |||||||| || Sbjct 170206 TGGCATACTGAATGTTACCGC 170226 >seq4121 Length=254077 Score = 104 bits (114), Expect = 2e-16 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||||||||| || || ||||| || ||||| ||||| ||||| |||||| Sbjct 189339 TCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTG 189398 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || || ||||| || ||| ||||| ||||| | | | | ||||||||||| Sbjct 189399 TCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAGGGCTCAACCTCAAGGGTAATG 189458 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| |||||||| ||||| || || Sbjct 189459 GTCTTTCCGGTCAGAGTCTTCACGAAGATCTG 189490 Score = 95.1 bits (104), Expect = 8e-14 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609 ||||||||||| || | || || || ||| ||| || |||||||| | ||||| Sbjct 189729 CGAAGACGGAGCACCAAGTGGAGGGTTGACTCCTTTTGGATG--TTATAATCGGATAGAG 189786 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | |||||| || ||||| || || || || | ||| || ||||| || || || | Sbjct 189787 TGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATAC 189846 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAA 480729 | |||||||| || ||||| || || ||||| ||||| | | || |||| Sbjct 189847 CCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGGAGGGTTCGACCTCAA 189906 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||| || || ||||| |||||||| ||||| || || Sbjct 189907 GGGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTG 189946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267933283813484