Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_020853.1 Length=56958 Score E Sequences producing significant alignments: (Bits) Value seq1178 150 7e-32 >seq1178 Length=17935 Score = 150 bits (166), Expect = 7e-32 Identities = 360/534 (67%), Gaps = 29/534 (5%) Strand=Plus/Minus Query 44462 AGGAAGTGGAAGAGGTTGTGTAGGTCAATCTTCCAATACCATTGGGTGTAGACATTGACC 44521 |||||||| | ||||| || || ||||||||||| |||||||| |||||| || | | Sbjct 12401 AGGAAGTGCATCAGGTTATGCAGATCAATCTTCCAGTACCATTGCGTGTAGGTGTTCAGC 12342 Query 44522 GGCAAGTTCATGCGGGCCAGTTCGCGGGCCAAGCCGT--CCT--GACCGTCATCGCTGAT 44577 | || ||| || ||||||||||| || |||| |||| ||| | |||| || | Sbjct 12341 GTCAGGTTGATACGGGCCAGTTCACGCGCCAGACCGTAGCCTTCGTCCGTATTC----AG 12286 Query 44578 CATCTCTTCATAGTGATCATAGGCGTTCTGGGCGTCGTTCATCAGGTAGTGTAGGACCCG 44637 ||| | |||||| | |||| | | ||||| || ||| | || ||| Sbjct 12285 CATTTTTTCATAATTGCTGTAGGTGCGCATCGCGTCATTGCGCAGAATATCCAGCACCTC 12226 Query 44638 CTGAGCCTCAGCC---CCCTGAAGAACATTATCATCGCGGCCCTGCCCGTTCACCTTCGA 44694 | ||| | ||| || | || || || |||||||||| ||| | |||| Sbjct 12225 C---GCCGCGGCCTCGCCTTCCAGCACGGCCCCA---CGGCCCTGCCGGTTGAT-TTCGC 12173 Query 44695 -CTGGGATGCGAGATCTTGGGGACTTGGGATGTAGAACTCACCCGGCATGATCGAATAGC 44753 ||| | || | | || || || | |||||||||| || || ||||||| Sbjct 12172 TCTGCGCCGCCATGTGTTCAGGCGCGGGCAAATAGAACTCACTGTCCAGAATGGAATAGC 12113 Query 44754 GGGCTGAGTATTCATTCACGTTGGCCGTCCGGTGACGGATCCATTGGCGGGCCACAAACA 44813 |||| || ||||| |||||| ||||| | ||||| || ||||| || ||||| | || | Sbjct 12112 GGGCAGAATATTCGTTCACGCTGGCCATACGGTGGCGAATCCACTGCCGGGCAATGAAGA 12053 Query 44814 CGGGCAGTTTGACATGAAGTTTGATCTCACAACCCTCAAACGGGCTGGTGTGCCAATGGC 44873 |||||||||||| |||| ||||||||||| ||||||||| || || | || | Sbjct 12052 TGGGCAGTTTGACGTGAAACTTGATCTCACACATCTCAAACGGTGAGGAATGGCGGTGCC 11993 Query 44874 GCATAAGGTAGCGGATTAGGTCGCGGTCCTTGCTGACACCCT--TGGTGCCCTGACCGTA 44931 |||| ||||||||||| || | ||| | | || ||| | ||||||| | ||||| Sbjct 11992 GCATCAGGTAGCGGATCAG--CCCGGCATCTTCAGAAACCTTGCGGGTGCCCCGGCCGTA 11935 Query 44932 GGATACGCGGGCCATCTGGACGATAGCG---CCGTCCGTGCCCATGTAGTCGAT 44982 ||| ||||| || ||| || || ||| ||||| |||||||| || || Sbjct 11934 GGAAACGCGTGCTGCCTGCACAATGGCGGAATCGTCC---CCCATGTAATCAAT 11884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 182131599750320