Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq5136 111 3e-19 seq5134 102 1e-16 >seq5136 Length=173398 Score = 111 bits (122), Expect = 3e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||| ||||| || | |||||| || ||||| ||||| | || | Sbjct 116131 CGGAGAACCAAGTGCAAAGTGGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGTCCG 116190 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||||||||||||||| || |||| ||| ||||| || || |||||||| ||| Sbjct 116191 TCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCCTTA 116250 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||| | || | ||| || |||||||| | || || || | || || Sbjct 116251 TCCTGGATTTTAGCCTTCACATTCTCGATGGTATCGGAGGGTTCGACCTCCAAGGTGATG 116310 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || || || || ||||| || |||||| Sbjct 116311 GTTTTTCCAGTGAGGGTCTTCACAAAGATCTGCATT 116346 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || || |||| || | || | ||| || || ||||| ||| Sbjct 115660 ATACCACCACGAAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAATCG 115719 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | ||||||||||| || || |||| ||| || || || Sbjct 115720 GACAGAGTACGTCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGG 115779 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| ||||| || || || | || | ||| || || || |||| |||| Sbjct 115780 GGAATTCCTTCCTTATCCTGAATCTTAGCCTTGACGTTTTCGATGGTGTCTGAAGGCTCA 115839 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| || || || || || | || || || || ||||||||| Sbjct 115840 ACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATT 115890 >seq5134 Length=897107 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | || || || |||| ||||| || | ||| || ||| |||||||| || Sbjct 635934 ACCACCACGCAGGCGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGA 635875 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | ||| || | || || || || || || | | ||| ||||| ||||| Sbjct 635874 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 635815 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 ||||||||||| || || || |||| ||| | |||| |||||||| |||| || || Sbjct 635814 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGAC 635755 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||||| || || || || || || || || || || || ||||| || Sbjct 635754 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 635704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899589928516560