Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5539 123 7e-23 seq5076 91.5 4e-13 >seq5539 Length=990776 Score = 123 bits (136), Expect = 7e-23 Identities = 180/252 (71%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 ||||| | ||| |||||||| || |||||| | ||| || ||||| |||||||| ||| Sbjct 427013 TTGATGAGACGTCGCTGAATGTAGCCAGTTTCTGCTGTCTTCACAGCCGTATCAATGAGA 427072 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAA 302702 || | ||||||||||| || ||||| | | ||| || ||| || || | | | | Sbjct 427073 CCCTCGCGACCACCCATGGCGTGGAAATAAAACTC-CGAGGGCGTCAGGCCGGCCAGATA 427131 Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762 ||| |||| ||||| ||||||| ||| || || ||| |||| | ||||| || || Sbjct 427132 CGAGTTCTCCACGAAGCCACGCGACTCCGGACCATAATCGTCCTTGATGAAGTGGGGAAG 427191 Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCA 302822 || | || ||||||| ||||| ||||| || || ||||||||||| |||| || Sbjct 427192 AGTGCGCTTGCGGAAGCCGTACGGGATTCGCTTGCCCTCCACGTTCTGCTGGCCCACACA 427251 Query 302823 CGAAATCATCTG 302834 | ||| | ||| Sbjct 427252 GGCAATGACCTG 427263 >seq5076 Length=1475555 Score = 91.5 bits (100), Expect = 4e-13 Identities = 145/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || ||||||||| ||||| ||||||||||| |||||||| || || || || || Sbjct 867520 ATTGTCATACGAGACGGAATGGCATGGGGATTAATGATGATATCCGGGGCCAAGCCCTC- 867462 Query 251905 GCA-GTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTTGTCCGT 251962 ||| ||||||| |||||||| | | | ||| || | ||| |||||||||||||||| Sbjct 867461 GCAGGTGAAGGCCATATCCTCCTGC-CTATACTGAATACCACACGTTCCCTTTTGTCCGT 867403 Query 251963 GACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTAC 252022 |||| || ||||||||| || || || || || || | |||| ||| | Sbjct 867402 GACGCGAGGCGAACTTATCGCCGATCTGGGGGATACGCACGGAGCGCACTCGAATCTTGC 867343 Query 252023 AGAAGTTGTAACCATCACCGTTG 252045 |||| ||||| || || | |||| Sbjct 867342 AGAACTTGTAGCCCTCGCTGTTG 867320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471709489018021