Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4847 172 7e-37 seq5474 143 3e-28 seq5407 140 4e-27 seq4956 140 4e-27 seq5553 136 5e-26 seq5134 136 5e-26 seq5516 129 7e-24 seq5076 89.7 6e-12 seq3719 89.7 6e-12 >seq4847 Length=495639 Score = 172 bits (190), Expect = 7e-37 Identities = 155/192 (81%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 1592106 AGAAGCGCACCGACGACATC-TCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCC 1592164 |||||||||||||||||||| || || ||||| || || | | ||||| ||| | Sbjct 145783 AGAAGCGCACCGACGACATCATCTCC-TGGGATGCCGACTTCCTCAAGGTCGATCAGGGC 145841 Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTT 1592224 ||||| || ||| | ||||| || |||||||| || ||||||||| |||||||| || Sbjct 145842 ACCCTGTTCGAGCTCATCCTGGCGGCCAACTATCTGGACATCAAGGGACTGCTCGAGCTC 145901 Query 1592225 GGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACC 1592284 |||||| | |||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 145902 ACCTGCAAGACGGTGGCCAACATGATCAAGGGCAAGACTCCCGAGGAGATCCGCAAGACC 145961 Query 1592285 TTTAACATCAAG 1592296 || ||||||||| Sbjct 145962 TTCAACATCAAG 145973 >seq5474 Length=204962 Score = 143 bits (158), Expect = 3e-28 Identities = 242/347 (70%), Gaps = 4/347 (1%) Strand=Plus/Plus Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGG 1573954 |||||| || ||| |||||||||||| | ||| ||| |||||| | ||||| | || Sbjct 20780 GGGTCCTCCTGGCGTGGGCAAGACCACCACCATTCAGTGCCTGGCGAGGATCCTCCTAGG 20839 Query 1573955 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGT 1574014 | | | | ||||| || ||||| || ||||| || | |||||||| |||| || Sbjct 20840 AGACAGCTACAAGGAGGCAGTCCTCGAGCTAAACGCCTCCAATGAGCGCGGAATCGATGT 20899 Query 1574015 CGTGCGCAAGATCATCAAGCACCACGCCTC-CAAGAGGATCGAC-CTGCCGCCCGGACGC 1574072 |||||||| | |||||| ||| ||| ||| ||| ||||||| || | Sbjct 20900 GGTGCGCAACAAGATCAAGATGTTTGCCCAGCAAAAGGT--GACACTGCCGCGGGGCAGG 20957 Query 1574073 CACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTG 1574132 |||||| | | |||||||||||||| ||| || | ||| || ||||||||||| ||| Sbjct 20958 CACAAGATCGTGATCCTCGACGAGGCGGACAGCATGACGGAGGGCGCCCAGCAGGCGCTG 21017 Query 1574133 CGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCG 1574192 || ||||||||| | ||| || ||| ||||| || ||| |||| |||||||| Sbjct 21018 CGCCGCACCATGGAGATCTACAGCAGCACCACGCGATTCGCCTTGGCCTGCAACACCAGC 21077 Query 1574193 TCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTT 1574239 || | ||||||| | | ||| || ||||| || ||||| || Sbjct 21078 GAGAAGATCATCGAACCGATTCAATCGCGTTGCGCTATGCTGCGATT 21124 >seq5407 Length=1844964 Score = 140 bits (154), Expect = 4e-27 Identities = 144/186 (77%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 1592112 GCACCGACGACATC-TCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTC 1592170 ||| |||||||||| ||||| ||||| || || | ||||| ||| |||||| Sbjct 1633169 GCAGCGACGACATCATCGCC-TGGGATCTCGAATTCCTTAAGGTCGATCAGAGCACCCTG 1633227 Query 1592171 TTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGC 1592230 |||||| | ||||| || |||||||| || ||||||||| ||||| || || ||| Sbjct 1633228 TTTGAGCTCATCCTGGCGGCCAACTATCTGGACATCAAGGGACTGCTGGAGCTCACCTGC 1633287 Query 1592231 AAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAAC 1592290 ||||| |||||||| ||||||||||||||| || || | |||||||| |||||||||| Sbjct 1633288 AAGTCGGTGGCCAATATGATCAAGGGCAAGACGGCCAAAAAGATCCGCCAGACCTTTAAT 1633347 Query 1592291 ATCAAG 1592296 |||||| Sbjct 1633348 ATCAAG 1633353 >seq4956 Length=297826 Score = 140 bits (154), Expect = 4e-27 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||||||||| || ||||| ||| | |||||| || || | | ||||| ||| || Sbjct 217541 AGAAGCGCACGGATGACATTTCGTCCTGGGACGCCGACTTCCTCAAGGTCGACCAGGGCA 217600 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | ||||| ||| ||||||| || ||||||||||| ||||| || |||||||| | Sbjct 217601 CTCTCTTCGAGCTGATCCTGGCTGCCAACTACCTGAACATCCAGGGGCTGCTCGACGTCA 217660 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| | |||||||| |||||||||||||||||||| |||| |||||| | |||| Sbjct 217661 CCTGCAAGACGGTGGCCAATATGATCAAGGGCAAGTCGCCGCAGGACATCCGCGACACCT 217720 Query 1592286 TTAACATCAA 1592295 | |||||| Sbjct 217721 TCGCCATCAA 217730 >seq5553 Length=810738 Score = 136 bits (150), Expect = 5e-26 Identities = 365/549 (66%), Gaps = 18/549 (3%) Strand=Plus/Plus Query 1852117 GTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGTCGCGCGCAAAGGCAAATATCTT 1852176 ||||| ||||||| ||||| | |||||||| | || |||| || ||||| Sbjct 802970 GTGGATGCGCTTCTCGTAGCCCAACTGCGGCAGGTACTTTTCCGAGAAGGTGAAGATCTT 803029 Query 1852177 GCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTG 1852236 |||||| ||| || || ||||||||||| || | ||||| || |||||| || ||||| Sbjct 803030 GCGCTGATCGACGCCACCGAACTGGGCGTCCACCTTGAGGTACTCCTCGTCCAGAGCCTG 803089 Query 1852237 CATGAGCGGG-TAGAGCACGTTGCTCAG-GAGCGGGTTGCGGTCCATCT---TGACCACC 1852291 || || |||| ||||| | | ||| |||| | | |||| || |||||||| Sbjct 803090 CA-GACCGGGATAGAGGA----GTCCAGAGAGCAGTGGGTACTCCACCTGTTTGACCACC 803144 Query 1852292 TGAGCGGCGGCCTTTTGCGC--CGTGCCG-GTGCGCAC-GTGCGCCGCGAGTCGGTAGAG 1852347 | ||| | ||||| | || | ||| | ||| ||| | || | ||| ||||| Sbjct 803145 TCGGCGCCCGCCTTCTTGGCATCATGCTGCGTGACCACCGAGCTC----AGTTTGTAGAC 803200 Query 1852348 GTCGAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCC 1852407 || || | ||| | | |||| || ||| |||| || |||| ||| | Sbjct 803201 ATCCAGGGTGTATTCCTTGGACAACTGATAGTCGCTGCCCTTGACGAACTTCAGTTTCTC 803260 Query 1852408 CAGCGGCACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCG 1852467 |||||| ||||| ||| |||||| |||||||| | |||||| | || || Sbjct 803261 CAGCGGAACGCCAATGGAACTGAGCATCGCCTTGATCACCTGCTCGTAGTACTGGGTGCG 803320 Query 1852468 GTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAA 1852527 | || | ||| |||||| | ||| |||||| || | ||| || | |||||||| Sbjct 803321 CAGCTCCAGGAGGGACCACGGTGCCTTCATGTTGTCCAGATAGGCATGGAGATCGGCAAA 803380 Query 1852528 GAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAGATGGGCACAAA 1852587 || || | || || || |||| || |||||||| | || | ||||||||||| Sbjct 803381 CAGAATGGTCACTTCGCATCCCGCCTTCAGGAAGTCGGCAATCTTCGACATGGGCACAAA 803440 Query 1852588 GTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATGATCAGGGGGCGCTC 1852647 |||| | | || || |||||||||| |||||| ||||| || || |||| || || Sbjct 803441 GTAGGCGACATGTGGCTTGCCCGTCGTCGCCGTTCCCCAGTAGATCTTCAGATCCCGTTC 803500 Query 1852648 GGCCATGAT 1852656 ||||| ||| Sbjct 803501 GGCCAGGAT 803509 >seq5134 Length=897107 Score = 136 bits (150), Expect = 5e-26 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 1628383 TCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCG 1628442 ||||| |||||||| | | || || | ||||||||| |||||| || | | || Sbjct 540300 TCGTGAAGGCCGGGGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCGACG 540359 Query 1628443 CGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCC 1628502 || ||||||||| || ||||||| ||||| || || ||||| || ||||||||| Sbjct 540360 CGCTTCATAAAGAGATCGGGTATCCACAGGGCGTAGAACAGATCGCGGGCGCGGTTCTCC 540419 Query 1628503 TCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCC 1628562 ||||||||| |||||| || || || || | || | | ||| | |||||| |||||| Sbjct 540420 TCCTTGCCGGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCC 540479 Query 1628563 AGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||||| |||||||||||| |||||||||||||| Sbjct 540480 AGGTAAATGGCAAAGGCGCCGGGACGCTTGCCGCCGCC 540517 >seq5516 Length=367667 Score = 129 bits (142), Expect = 7e-24 Identities = 173/238 (73%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||| | |||||| |||||||| ||||||||||| ||| | |||| | | | Sbjct 270286 CCGAGTGCACGTTCTCCATGGCGATTTGGAAGCCGTAGAAGCAGCGTGCCTCCGTGATCT 270345 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | ||||||| |||| || || |||||||||| |||||||| ||| |||||||| Sbjct 270346 GAACCTCCTGGCTGAAGCGCTCGACCAGGTTCTCATTTACGATGCCATCGGAGGCGGCGA 270405 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT-GG 869809 | || ||||| |||||| ||| |||||||||||||| || | || ||||| || Sbjct 270406 AGAAGGCCAGCACGTGCGAGATGAAGTGGCGCTCGTCATCCTTCAGGCGGTGCCAGTCGG 270465 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | | ||| | || ||||||||||| | ||||||| |||||||| |||| || Sbjct 270466 TCAG-GTCCTTGGACAGATCCACCTCCTCCACTGTCCAGAAAGAGGCCTCAGCCTGTT 270522 Score = 111 bits (122), Expect = 2e-18 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 |||||||||||| | ||| || |||||||||||||| || |||||||||| |||||| Sbjct 269699 GTACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCCAT 269758 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | ||| ||||| ||| |||||| ||| || || | | | |||| ||| Sbjct 269759 GAAGTTGAAGGGGTTCTTCGTATTGTAGATCTTGCCGACGCCCAATTCCACCAGCAAGCG 269818 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 || || || |||||||||||||| |||| || || |||||||||||||| ||| Sbjct 269819 ATCCGCCACGAACTCGATGTACTGCGACATCAGATCGCAATTCATGCCGATGAGGTTCAC 269878 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934 ||||| | ||| | | ||||| | || || | || || || |||||||| Sbjct 269879 GGGCAGGGCATCGGTGAGGAACTCCTGTTCAATGGCCACTGCATCTCGGATGATCT 269934 Score = 109 bits (120), Expect = 7e-18 Identities = 187/270 (69%), Gaps = 5/270 (2%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| || ||| | |||||| |||| || || ||||| || ||||||||| Sbjct 270006 CCCTCGTCTCGGGAGATAAGCTCGTTGGAGAAGGTCAGTCCCGGCATCAGACCGCGCTTC 270065 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| || |||| | ||| ||||| ||| ||||||||||||||||| || ||| Sbjct 270066 TTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCGACGGCAGCGAAG 270125 Query 869300 CCGATGAGCCGCTCGGC-AAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | |||| ||||| | ||| | ||| || | |||||| | ||||| Sbjct 270126 GCAATGATGCGCTCTCCGAAATTGGCCGA----CTTGGAGGAGATCCAGGAAAGAGCCCA 270181 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 ||| ||||| | |||| | ||||| ||| ||||||||| || |||| ||| | Sbjct 270182 GTCCGCCTTGCGCTTCACAGCCGGCATCGTCTCGATGGCGTTGAACAGGTATTCCCGCTG 270241 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAG 869448 | ||||||| || || ||||||||||| Sbjct 270242 GTGCGGGTCCCGGATGTATGTGTCGATCAG 270271 >seq5076 Length=1475555 Score = 89.7 bits (98), Expect = 6e-12 Identities = 177/257 (69%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 731412 CTGCGCTACGCGCTCATGACCGGCAACTGGACCGTGCAAAAGGGCGCCGCGTC-GGCGTC 731470 ||||| ||| |||| || ||||||||| || || ||| ||| | || |||| Sbjct 865850 CTGCGGTACTCGCTGGCCACTGGCAACTGGGGCGACCAGAAGAAGGCC-CATCAGGCGAG 865908 Query 731471 GACGGGCGTCGCGCAGATGCACAACCGCATGACGGTGACGTCGGCCCTGTCCAACATGCG 731530 | | |||||| ||||| || || ||| |||| | | || | || ||| | |||| Sbjct 865909 GGCAGGCGTCTCGCAGGTGTTGAATCGCCTGACCTTCGCCTCCACTCTCTCCCATTTGCG 865968 Query 731531 CCGCGTCAACACGCCCATCAACAAGGAGGGCCGGCTGCCCAAGGTGCGCCAACTGCGCGA 731590 || |||||| |||| || | ||| ||| |||| ||||| ||| || |||| | | Sbjct 865969 GCGTGTCAACTCGCCGATTGGTAGGGATGGCAAGCTGGCCAAGCCGCGTCAGCTGCACAA 866028 Query 731591 CAGCGTGGCGGGCCTCCTGTGCCCCGTGGAGACGCCCGAGGGCGGCTCGTG-CGGCCTCG 731649 || || |||| | |||| |||| |||||||||||||| ||| || |||||| | Sbjct 866029 CACTCTGTGGGGCATGTTGTGTCCCGCCGAGACGCCCGAGGG-AGCTGCTGTCGGCCTGG 866087 Query 731650 TGAGCAACCTGGCCCTC 731666 ||| ||||| |||||| Sbjct 866088 TGAAGAACCTCGCCCTC 866104 >seq3719 Length=165196 Score = 89.7 bits (98), Expect = 6e-12 Identities = 178/263 (68%), Gaps = 3/263 (1%) Strand=Plus/Minus Query 1572380 CCGGTCGAGCCAAAGCCGCCGCTGCCGCGCTCGGTGTCGTCCAGCGAGTCGACCCACTCG 1572439 ||||| || ||||| ||| |||||| |||||||| ||||| ||| ||| |||| Sbjct 79927 CCGGTGGAACCAAATCCGTTCTCGCCGCGTTCGGTGTCCTCCAGTTTGTCCACCAACTCC 79868 Query 1572440 GGCTCGGGTTGGGCAATCTTTTCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGACA 1572499 |||| || | | || ||| | |||||||||||||| | ||| || || Sbjct 79867 AGCTCCGGATAGAAGATGCGCTCGCAAATGAACTGGGCGATGCGGTCGCCGCGCTTCACC 79808 Query 1572500 ACGTGGTCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGCA 1572559 || || |||| | ||| || || || || ||||||| | |||||| || || | Sbjct 79807 TCGAACTCCACGTCCGAGTGATTAAACAGGACAACGCCCAGGTTGCCGCGGTAATCCTCG 79748 Query 1572560 TCGATGACGCCTGCGCCGACGTCGAT---GCCCCTGACGGCCAGGGACGAGCGCGGCGCC 1572616 || | ||||| || || || ||||| | | | |||||||| || ||||| ||| Sbjct 79747 TCCACCACGCCGGCACCCACATCGATGAAGTTCTTCACGGCCAGTCCGGACCGCGGGGCC 79688 Query 1572617 ACGCGCCCATAGTAGCCCGCGGG 1572639 ||||| || ||| ||||| |||| Sbjct 79687 ACGCGTCCGTAGGAGCCCTCGGG 79665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106668723172361