Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq4865 165 7e-36 seq4881 86.0 5e-12 seq3746 86.0 5e-12 >seq4865 Length=1237233 Score = 165 bits (182), Expect = 7e-36 Identities = 166/214 (78%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 |||| ||||| | | || || ||||||| |||||| || ||||| || ||||| || || Sbjct 32375 TTGTGATCGAACAGAGTCTGGGCGCCCAACTCGCAGCCAAAGTATTTAGTCGGATAGGTG 32316 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 ||||| ||||| | ||| ||| | ||||| ||||||||| | || ||||| |||||| Sbjct 32315 GCCGGGCGTCCGATGGCCCGGGCCACTTCGGCCATGTTGACAAGAACGGTCTTTATGCCG 32256 Query 34552 TTGCCCTTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609 || ||||| || |||||||| || ||||| || ||||| |||||||| ||||| || Sbjct 32255 TTTCCCTTGCCCTCGACCTTCGCCTGCAGA--CGTGGCATCTTGTAGCGATAGAAGATGT 32198 Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643 ||| |||| ||||||||||||| || || |||| Sbjct 32197 CCGTCACACTGCGGTTAACGTTTACGGTGGCCAT 32164 >seq4881 Length=334723 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 107171 GGACTGCACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCC 107230 || ||||||||||||||||||||||| || || |||| || ||||||||| | ||| || Sbjct 297075 GGCCTGCACGGCTTCCACGTGCACGAGTTCGGGGACAACACCAACGGCTGCATGTCGTCC 297016 Query 107231 GGTGAACACTTCAATCCCACATACCAAAATCACGGTGCGCCCGACGCCGTAGAA-AGGCA 107289 || ||||||||||||| | | | ||||| || ||| || || |||| | || Sbjct 297015 GGACCCCACTTCAATCCCAAGGGCAAGGAGCACGGCGCTCCCACCGACG-AGAACCGTCA 296957 Query 107290 CGTCGGCGATCTGGGCAAC 107308 | | ||||| || |||||| Sbjct 296956 CCTGGGCGACCTTGGCAAC 296938 >seq3746 Length=358675 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| | |||||||| ||||| ||| | || ||||||| Sbjct 174396 ATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 174337 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || ||||| ||||| || ||| | ||| |||||| Sbjct 174336 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAG 174277 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || || || ||||||||||| | | || || | || |||||| Sbjct 174276 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAAC 174217 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || || || ||||| ||||| | | ||||| || || Sbjct 174216 ATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGCGGTGG 174170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412812754370369