Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq4881 95.1 1e-14 seq5136 91.5 1e-13 seq3746 91.5 1e-13 >seq4881 Length=334723 Score = 95.1 bits (104), Expect = 1e-14 Identities = 228/339 (67%), Gaps = 11/339 (3%) Strand=Plus/Minus Query 105081 GGACTGCACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCC 105140 || ||||||||||| ||||| ||||||||||| || | || ||||||||||| ||| || Sbjct 297075 GGCCTGCACGGCTTCCACGTGCACGAGTTCGGGGACAACACCAACGGCTGCATGTCGTCC 297016 Query 105141 GGCGAGCACTTCAACCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAA-AGGCA 105199 || |||||||| || | | || | | ||||||||||| || || |||| | || Sbjct 297015 GGACCCCACTTCAATCCCAAGGGCAAGGAGCACGGCGCTCCCACCGACG-AGAACCGTCA 296957 Query 105200 CGTCGGCGACCTGGGCAA---TGTCCGCTCCGCGGGATGCAGCGCGCTCACGCCTATAGA 105256 | | |||||||| ||||| || | ||| | ||| | | | | | | || Sbjct 296956 CCTGGGCGACCTTGGCAACATTGAGGCCACCGGCGACTGC--CCCACCAAGGTC---AG- 296903 Query 105257 CATCAGCGACAATTTAATAAGTTTGTTTGGTCCTCTGAGCATATTGGGCCGCAGCTTGGT 105316 ||||| |||| || | | || || | ||||| | ||||||| | |||| Sbjct 296902 CATCACCGACTCCAAGATCACGCTTTTCGGCGCCGACAGCATCATCGGCCGCACCGTGGT 296843 Query 105317 CGTGCACACGCATCGCGATGACCTCGGCTTGACAGACCACCCACTTAGCAAAATTACGGG 105376 || ||| | || |||||| |||||| | | |||| || ||||| ||||| Sbjct 296842 GGTCCACGCCGATGCCGATGATCTCGGCAAGGGTGGCCACGAGCTGAGCAAGTCCACGGG 296783 Query 105377 CAACGCGGGCGGCCGGTTGGGGTGCGGCATCATCGGAAT 105415 |||||| |||| ||| | || |||||| ||||||| || Sbjct 296782 CAACGCTGGCGCCCGAATTGGCTGCGGCGTCATCGGCAT 296744 >seq5136 Length=173398 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || || || ||||| || || |||||||| ||| | ||| ||| | | Sbjct 115205 ATGCAAATCTTCGTGAAGACTTTGACCGGAAAAACCATCACCCTGGAAGTCGAGCCATCC 115146 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | ||||| ||||| ||||| || || | ||| |||||| Sbjct 115145 GACACCATCGAGAATGTAAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGATCAG 115086 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || || |||||||||| || || | ||||||||| Sbjct 115085 CAGCGTCTCATCTTCGCCGGAAAGCAACTGGAGGACGGACGTACTCTGTCCGACTACAAC 115026 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || |||||| ||||| Sbjct 115025 ATCCAGAAGGAGTCCACTTTGCACTTGGTG 114996 >seq3746 Length=358675 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| ||||| | || ||||| ||||| ||| | || |||| || Sbjct 174396 ATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 174337 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || || || ||| | ||| ||||||| Sbjct 174336 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAG 174277 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||||||||||| || || | ||||||||| Sbjct 174276 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAAC 174217 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || ||||| ||||| Sbjct 174216 ATCCAGAAGGAGTCGACCCTGCACTTGGTG 174187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398848930104037