Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq5136 116 9e-21 seq3746 98.7 2e-15 seq4121 91.5 3e-13 seq5134 87.8 4e-12 >seq5136 Length=173398 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || |||||| | || || || ||| ||||| ||||| || ||| Sbjct 115865 ACTGGCAAGACCATCACTCTTGAGGTTGAGCCTTCAGACACCATCGAAAACGTCAAGGCT 115806 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || ||||||||| || ||| || || | |||||||||||||| Sbjct 115805 AAGATTCAGGATAAGGAAGGAATTCCCCCAGACCAGCAGCGATTGATCTTCGCCGGAAAA 115746 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | ||||||||| | ||| || ||||||| ||| ||||||| ||||| || |||||| Sbjct 115745 CAGCTTGAAGATGGACGTACTCTGTCCGATTATAACATCCAGAAGGAGTCGACCCTTCAC 115686 Query 206374 CTTGTTTTGAGACTTCG 206390 | ||| | | ||||| Sbjct 115685 TTGGTTCTCCGTCTTCG 115669 Score = 100 bits (110), Expect = 7e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || |||||||| ||||| ||||||| || || ||||| |||| |||||| Sbjct 115181 ACCGGAAAAACCATCACCCTGGAAGTCGAGCCATCCGACACCATCGAGAATGTAAAGGCC 115122 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || || |||||| || || || | || ||||||||||||||| Sbjct 115121 AAGATCCAGGATAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTCATCTTCGCCGGAAAG 115062 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || |||| || ||| | ||| || |||| |||||| ||||||| ||||| ||| | ||| Sbjct 115061 CAACTGGAGGACGGACGTACTCTGTCCGACTACAACATCCAGAAGGAGTCCACTTTGCAC 115002 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| |||||||| ||||| ||||| || ||| || || Sbjct 116342 CAGATCTTTGTGAAGACCCTCACTGGAAAAACCATCACCTTGGAGGTCGAACCCTCCGAT 116283 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| || || || || || |||||||| || || || Sbjct 116282 ACCATCGAGAATGTGAAGGCTAAAATCCAGGATAAGGAAGGAATCCCCCCAGATCAGCAG 116223 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| |||||||| || ||||| || ||| | || || ||||||| ||| || Sbjct 116222 CGATTGATCTTTGCCGGAAAACAATTGGAGGACGGACGCACCCTGTCCGATTATAACATC 116163 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| ||| | ||| | ||| | | ||||| Sbjct 116162 CAGAAAGAGTCCACTTTGCACTTGGTTCTCCGTCTTCG 116125 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || || ||||| ||||| ||||| ||| || Sbjct 117026 CAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCCGAT 116967 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || ||| || ||| || Sbjct 116966 ACGATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGTATTCCCCCAGACCAGCAG 116907 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | |||||||||||||||||| | ||||||||| | || || |||| |||||| || Sbjct 116906 CGATTGATCTTCGCCGGAAAGCAGCTCGAAGATGGACGCACCCTGTCCGACTACAACATC 116847 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| || || || ||||| Sbjct 116846 CAGAAGGAATCCACCCTTCA 116827 Score = 84.2 bits (92), Expect = 5e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || ||||| ||||||| || || ||||| |||| |||||| Sbjct 116093 ACCGGAAAGACCATCACCCTGGAAGTCGAGCCATCCGACACCATCGAGAATGTAAAGGCC 116034 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || ||||| || || || | || |||||||| || || Sbjct 116033 AAGATCCAAGACAAGGAGGGAATCCCTCCAGATCAGCAGCGTCTCATCTTCGCTGGCAAA 115974 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || |||| || ||| | || || ||||||||||| ||||||| |||||||| || || Sbjct 115973 CAACTGGAGGACGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCTACCCTCCA 115915 >seq3746 Length=358675 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| ||||| ||||| ||| ||||| |||| Sbjct 174381 AAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCGGACACCATCGAGAAT 174322 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||||| || | || |||||| Sbjct 174321 GTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGTCTGATCTTC 174262 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || ||| | || || |||| |||||| ||||||| ||||| Sbjct 174261 GCCGGCAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAACATCCAGAAGGAGTCG 174202 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 174201 ACCCTGCAC 174193 >seq4121 Length=254077 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || || ||||||||||| || || || || Sbjct 189262 CAGATCTTCGTCAAGACTCTTACTGGCAAGACCATCACTTTGGAGGTCGAGCCATCCGAT 189203 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || || ||||| || || || Sbjct 189202 ACCATTGAGAACGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCTCCAGATCAGCAG 189143 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||||||||||||| |||| |||||| | ||| | |||| |||||| || Sbjct 189142 CGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGACGCACTCTATCCGACTACAACATC 189083 Query 206353 CAGAAAGAGTCTACT 206367 ||||| ||||||||| Sbjct 189082 CAGAAGGAGTCTACT 189068 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||||||||| || ||| || || || |||| || ||| Sbjct 190381 ACTGGCAAGACCATCACTTTGGAGGTCGAACCCTCCGATACCATCGAGAATGTCAAGGCT 190322 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || || ||||| || || || | || |||||||| |||||| Sbjct 190321 AAGATCCAGGACAAGGAGGGAATCCCTCCAGATCAGCAGCGTCTGATCTTCGCTGGAAAG 190262 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| || ||| | || ||| ||||||| ||| ||||||| ||||| || |||||| Sbjct 190261 CAGCTGGAGGACGGACGCACCTTGTCCGATTATAACATCCAGAAGGAGTCCACCCTTCAC 190202 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || || ||||||||||| || ||| ||||| Sbjct 190174 CAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACTTTGGAGGTTGAACCCTCTGAT 190115 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || ||||| || || || Sbjct 190114 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATCAGCAG 190055 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||| |||||| |||| || ||| | ||| | | || |||||| || Sbjct 190054 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTTTCTGACTACAACATC 189995 Query 206353 CAGAAAGAGTCTACT 206367 ||||| ||||||||| Sbjct 189994 CAGAAGGAGTCTACT 189980 >seq5134 Length=897107 Score = 87.8 bits (96), Expect = 4e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || |||||| | || || ||| ||| || || ||||| Sbjct 635722 AAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCTTCGGATACTATCGAAAAT 635781 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || |||||| || |||||||||||| || || || | || ||||| Sbjct 635782 GTCAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAGCGTCTGATCTT 635840 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| |||||||||| | || | | || || ||| | ||||| ||||| Sbjct 635841 CGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAACATTCAGAAGGAGTC 635900 Query 206364 TACTCTTCAC 206373 ||| | ||| Sbjct 635901 CACTTTGCAC 635910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181733990461093