Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq5136 82.4 7e-11 >seq5136 Length=173398 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || || |||||||| | ||||| | |||||||| |||| | Sbjct 116117 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTCGA-GCCATC 116059 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || |||||| | ||||| || || || || ||||| || || || ||||| Sbjct 116058 CGACACCATCGAGAATGTAAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGATCA 115999 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351 ||| | ||||| | || ||||||||||| || || | | | |||| ||||||| Sbjct 115998 GCAGCGTCTCATCTTCGCTGGCAAACAACTGGAGGACGGACGCACCCTGTC--CGATTAC 115941 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || || || || || ||| | ||||| || Sbjct 115940 AACATCCAGAAGGAGTCTACCCTCCATTTGGT 115909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445062503422560