Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq5503 334 9e-87 seq5134 334 9e-87 >seq5503 Length=77054 Score = 334 bits (370), Expect = 9e-87 Identities = 483/677 (71%), Gaps = 22/677 (3%) Strand=Plus/Plus Query 146841 GAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGGTCGGGGGTT 146900 |||||| || ||||||| |||| ||| | ||| |||||||| ||||| || || || Sbjct 66251 GAAATCCTCGATGTCCTGCACCTGCCGCTTGATCACCAGCTTGGGAAAGGGACGCGGCTT 66310 Query 146901 CCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAG 146960 | ||||||| ||||||||||||||| || || |||||||| |||| ||| |||| Sbjct 66311 ACGCTCCAGCTGCTCTTTCAGGGGCTCCACATGATTTAGGTAGACATGCGTGTCGCCCAT 66370 Query 146961 GGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAG 147020 |||||| |||||||| || || || || || ||||| ||||| | ||||| ||||||||| Sbjct 66371 GGTGTGTACAAAGTCTCCTGGTTTTAGACCCGTCACATGGGCGATCATGTGGGTGAGCAG 66430 Query 147021 CGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAG 147080 | |||| ||| ||||||||||| || |||||||||||||| | || ||||||||| Sbjct 66431 GGCGTAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCGCTGGTACAG 66490 Query 147081 CTGGCACGAGAGCTCCCCG------TCGGCCACGTAAAACTGGCACAGGATGTGGCACGG 147134 |||||| |||||||| ||| | | ||||| |||||| |||| ||||||||| Sbjct 66491 CTGGCAGGAGAGCTCGCCGCGCGTCTGTGAGACGTAGAACTGGGCCAGGCAGTGGCACGG 66550 Query 147135 CGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCT 147194 |||||| ||||| ||| | |||| || ||||||||||| | | | |||||| Sbjct 66551 CGGCAGGGCCATCTTGGGTATGTCCAGCGGATTCCAGGCCGACATGATGATGCGCCTGTC 66610 Query 147195 CTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCC 147254 | ||| || |||| || ||||| ||| | ||||||||| | ||||| ||| | Sbjct 66611 CGAGGGATTATTCTTGATAGTGTCGATCACCTGGCGCAGCTGGTCGATGCCCTTGCCGCT 66670 Query 147255 GTAGTTTGTC-CCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACA 147313 ||| ||||| ||||| ||||| ||||| || || | |||||||||||| |||| Sbjct 66671 GTA-ATTGTCGTCGCAGGTGCCGTACTCCGCCCCGAAATGACGCCACTGGAAGCCATACA 66729 Query 147314 CTGGCCCCAGGTCGCC----GGGCTTTCTGTGCGAGAAGCCCGCCCGCTTG---AGAAAC 147366 | || || |||||||| | || || ||| | || || ||||| || ||| Sbjct 66730 CCGGGCCGAGGTCGCCCACGGCGCGCTCCGTGTG----GC---CCAGCTTGTCCAGGAAC 66782 Query 147367 TCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCC 147426 || ||| | || | |||||||| || |||||| ||| ||| | |||| Sbjct 66783 TCCCGGGTGCTGTTCCCATCCCAGATATGAACGTTCTTGGCCTGCAGCAGCTTGGCGTCC 66842 Query 147427 GTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTG 147486 || ||| | ||||||||||||||||| ||| | | | ||||| | |||| Sbjct 66843 GTCTGGCCAGCCACAAACCAGAGCAGCTCCTCGGCCACCGCGCGGAAGAAGACGCGCTTG 66902 Query 147487 GTGGTCAGCAGGGGGAA 147503 ||||||||||||||||| Sbjct 66903 GTGGTCAGCAGGGGGAA 66919 >seq5134 Length=897107 Score = 334 bits (370), Expect = 9e-87 Identities = 483/677 (71%), Gaps = 22/677 (3%) Strand=Plus/Minus Query 146841 GAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGGTCGGGGGTT 146900 |||||| || ||||||| |||| ||| | ||| |||||||| ||||| || || || Sbjct 890997 GAAATCCTCGATGTCCTGCACCTGCCGCTTGATCACCAGCTTGGGAAAGGGACGCGGCTT 890938 Query 146901 CCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAG 146960 | ||||||| ||||||||||||||| || || |||||||| |||| ||| |||| Sbjct 890937 ACGCTCCAGCTGCTCTTTCAGGGGCTCCACATGATTTAGGTAGACATGCGTGTCGCCCAT 890878 Query 146961 GGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAG 147020 |||||| |||||||| || || || || || ||||| ||||| | ||||| ||||||||| Sbjct 890877 GGTGTGTACAAAGTCTCCTGGTTTTAGACCCGTCACATGGGCGATCATGTGGGTGAGCAG 890818 Query 147021 CGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAG 147080 | |||| ||| ||||||||||| || |||||||||||||| | || ||||||||| Sbjct 890817 GGCGTAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCGCTGGTACAG 890758 Query 147081 CTGGCACGAGAGCTCCCCG------TCGGCCACGTAAAACTGGCACAGGATGTGGCACGG 147134 |||||| |||||||| ||| | | ||||| |||||| |||| ||||||||| Sbjct 890757 CTGGCAGGAGAGCTCGCCGCGCGTCTGTGAGACGTAGAACTGGGCCAGGCAGTGGCACGG 890698 Query 147135 CGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCT 147194 |||||| ||||| ||| | |||| || ||||||||||| | | | |||||| Sbjct 890697 CGGCAGGGCCATCTTGGGTATGTCCAGCGGATTCCAGGCCGACATGATGATGCGCCTGTC 890638 Query 147195 CTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCC 147254 | ||| || |||| || ||||| ||| | ||||||||| | ||||| ||| | Sbjct 890637 CGAGGGATTATTCTTGATAGTGTCGATCACCTGGCGCAGCTGGTCGATGCCCTTGCCGCT 890578 Query 147255 GTAGTTTGTC-CCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACA 147313 ||| ||||| ||||| ||||| ||||| || || | |||||||||||| |||| Sbjct 890577 GTA-ATTGTCGTCGCAGGTGCCGTACTCCGCCCCGAAATGACGCCACTGGAAGCCATACA 890519 Query 147314 CTGGCCCCAGGTCGCC----GGGCTTTCTGTGCGAGAAGCCCGCCCGCTTG---AGAAAC 147366 | || || |||||||| | || || ||| | || || ||||| || ||| Sbjct 890518 CCGGGCCGAGGTCGCCCACGGCGCGCTCCGTGTG----GC---CCAGCTTGTCCAGGAAC 890466 Query 147367 TCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCC 147426 || ||| | || | |||||||| || |||||| ||| ||| | |||| Sbjct 890465 TCCCGGGTGCTGTTCCCATCCCAGATATGAACGTTCTTGGCCTGCAGCAGCTTGGCGTCC 890406 Query 147427 GTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTG 147486 || ||| | ||||||||||||||||| ||| | | | ||||| | |||| Sbjct 890405 GTCTGGCCAGCCACAAACCAGAGCAGCTCCTCGGCCACCGCGCGGAAGAAGACGCGCTTG 890346 Query 147487 GTGGTCAGCAGGGGGAA 147503 ||||||||||||||||| Sbjct 890345 GTGGTCAGCAGGGGGAA 890329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583446185791200