Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5516 212 9e-49 seq5474 134 2e-25 seq5134 116 5e-20 seq5076 100 4e-15 seq5539 89.7 7e-12 >seq5516 Length=367667 Score = 212 bits (234), Expect = 9e-49 Identities = 341/486 (70%), Gaps = 8/486 (2%) Strand=Plus/Minus Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC 1455852 || |||| |||||||| || ||||| | |||||||| || || | ||| | | Sbjct 270522 AACAGGCTGAGGCCTCTTTCTGGACAGTGGAGGAGGTGGATCTGTCCAAGGACCTGACCG 270463 Query 1455853 ACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTC 1455912 ||||| |||| || ||||||||||| |||||| |||||| || ||||| || | Sbjct 270462 ACTGGCACCGCCTGAAGGATGACGAGCGCCACTTCATCTCGCACGTGCTGGCCTTCTT-C 270404 Query 1455913 GCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAA 1455972 |||||| |||||||||||| |||||||||| || ||||| | | ||||| || Sbjct 270403 GCCGCCTCCGATGGCATCGTAAATGAGAACCTGGTCGAGCGCTTCAGCCAGGAGGTTCAG 270344 Query 1455973 TTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAA 1456032 | | |||||||| | || ||||| ||||| |||||||| || ||| | ||||| || Sbjct 270343 ATCACGGAGGCACGCTGCTTCTACGGCTTCCAAATCGCCATGGAGAACGTGCACTCGGAG 270284 Query 1456033 ACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTT 1456092 | ||| | ||||||||||| ||| || ||||||| | || ||| |||| || Sbjct 270283 ATGTACAGTGTGCTGATCGACACATACATCCGGGACCCGCACCAGCGGGAATACCTGTTC 270224 Query 1456093 CGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGA-- 1456150 ||||||||| ||| ||||| | |||| | ||||| |||||||| | |||| Sbjct 270223 AACGCCATCGAGACGATGCCGGCTGTGAAGCGCAAGGCGGACTGGGCTCTTTCCTGGATC 270164 Query 1456151 TCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGG 1456209 || | | | |||| | || | ||||| || | | ||| || | ||||||||| Sbjct 270163 TCCTCCAAGTCGGCC----AATTTCGGAGAGCGCATCATTGCCTTCGCTGCCGTCGAGGG 270108 Query 1456210 CATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCC 1456269 |||||| ||| ||||| ||| | |||| || ||||| ||||||||||| || ||||| Sbjct 270107 CATCTTCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCC 270048 Query 1456270 CGGTCT 1456275 || || Sbjct 270047 GGGACT 270042 >seq5474 Length=204962 Score = 134 bits (148), Expect = 2e-25 Identities = 206/294 (70%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 332924 GTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGG 332983 ||||||||||||| ||| || ||||| || || | | | |||||||| || || Sbjct 21073 GTGTTGCAGGCCAAGGCGAATCGCGTGGTGCTGCTGTAGATCTCCATGGTGCGGCGCAGC 21014 Query 332984 GCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGC 333043 ||||| ||||| || ||| | || ||| |||||||||||||| | ||||||||| | Sbjct 21013 GCCTGCTGGGCGCCCTCCGTCATGCTGTCCGCCTCGTCGAGGATCACGATCTTGTGCCTG 20954 Query 333044 CCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCC 333103 || ||||||| ||| ||| | ||| ||||| | |||||||| || || Sbjct 20953 CCCCGCGGCAGTGTCACCTTTTGCTGGGCAAACATCTTGATCTTGTTGCGCACCACATCG 20894 Query 333104 ACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAG 333163 | |||||||| | || ||||| || ||||| || ||||| | | | | || | | Sbjct 20893 ATTCCGCGCTCATTGGAGGCGTTTAGCTCGAGGACTGCCTCCTTGTAGCTGTCTCCTAGG 20834 Query 333164 AGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 |||| | |||||||||| ||| | |||||||||||| ||| || |||||| Sbjct 20833 AGGATCCTCGCCAGGCACTGAATGGTGGTGGTCTTGCCCACGCCAGGAGGACCC 20780 >seq5134 Length=897107 Score = 116 bits (128), Expect = 5e-20 Identities = 161/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 |||||||||||||| |||||||||||| |||||||| || |||||| | ||| || Sbjct 540517 GGCGGCGGCAAGCGTCCCGGCGCCTTTGCCATTTACCTGGAGCCCTGGCACTCGGACGTC 540458 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 | | | ||||| || || |||||| ||||| ||| |||||||| |||| ||| Sbjct 540457 TTTGAGTTCCTGGAACTGAAGAAGAACACCGGCA----AGGAGGAGAACC--GCGCCCGC 540404 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 ||||| || |||| |||||||| ||| || |||||| ||| | | | || || Sbjct 540403 GATCTGTTCTACGCCCTGTGGATACCCGATCTCTTTATGAAGCGCGTCGAGGCCAATGGC 540344 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGA 262011 || ||||||||| | ||||| | | |||||||| ||||| Sbjct 540343 GATTGGTCGCTCATGTGCCCCCACAAATGCCCCGGCCTTCACGA 540300 Score = 89.7 bits (98), Expect = 7e-12 Identities = 197/292 (67%), Gaps = 4/292 (1%) Strand=Plus/Minus Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955 ||||| ||| | |||||| ||| ||||||| || ||| || | |||| || | Sbjct 540804 TGTCGGAGCGTTACTTCACCCATGCGTCGCCCACACTTTTTGCCGCTGCCACGAATCGGC 540745 Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATG 260015 ||||| || ||||| || || | ||||| |||||| || ||||||||||| | Sbjct 540744 CGCAGCTGTCCTCGTGTTTCCTCCTCACCATGACGGCCGACTCCATCGAGGGCATTTTCA 540685 Query 260016 ACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCAC 260075 | | | |||||||||| | ||||| ||| |||| ||||||||||| | | | Sbjct 540684 AGTCCGTGGAGCAGTGCGCCATGATCTCGAAGTCGGCTGGCGGCATCGGGCTAAATGTCC 540625 Query 260076 ACAAGGTGCGCGCCGCGGGCGCCTACG--TGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 || | || || |||| ||| || | || ||||| |||||| ||||| ||||| Sbjct 540624 ACTGCATCCGGGCGAAGGGCACCT-CGATTTGC-GGCACGAACGGCACCTCCAATGGCCT 540567 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 || |||||||| | || || ||| | ||| || || || || ||| || Sbjct 540566 CGTTCCCATGCTGAGGGTCTTCAACAATGTGGCACGTTATGTGGATCAGGGC 540515 >seq5076 Length=1475555 Score = 100 bits (110), Expect = 4e-15 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 1602103 AGGGCCAGGTTGCTCACGAGGCCG-CACGAGCCGCCCTCGGGCGTCTCCACGGGACACAA 1602161 ||||| ||||| |||| |||||| || ||| |||||||||||||| |||||||||| Sbjct 866103 AGGGCGAGGTTCTTCACCAGGCCGACAGCAGCT-CCCTCGGGCGTCTCGGCGGGACACAA 866045 Query 1602162 GAGACCCGCCACGCTGTCGCGCAGTTGGCGCACCTTGGGCAGTTTGCCCTCCTTGTTGAT 1602221 | ||| || ||| | |||| || ||| ||||| ||| ||||| ||| | || Sbjct 866044 CATGCCCCACAGAGTGTTGTGCAGCTGACGCGGCTTGGCCAGCTTGCCATCCCTACCAAT 865985 Query 1602222 GGGCGTGTTGACGCGGCGCATGTTGGACAGGGCCGACGTGACGGTCATGCGATTGTGCAT 1602281 |||| |||||| || |||| | ||| || | || | || ||||| |||||| || Sbjct 865984 CGGCGAGTTGACACGCCGCAAATGGGAGAGAGTGGAGGCGAAGGTCAGGCGATTCAACAC 865925 Query 1602282 CTGCGCGACGCC 1602293 ||||| |||||| Sbjct 865924 CTGCGAGACGCC 865913 >seq5539 Length=990776 Score = 89.7 bits (98), Expect = 7e-12 Identities = 140/199 (70%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 1818074 AAAGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACGCCCAC 1818133 |||||| || || ||||||||||||| | ||| | | || || |||||||| Sbjct 429236 AAAGGG-GTGACCAGCTCGGGAAAGGTCAAATTCTGGGCAATGGAGCGTGGTACGCCCAC 429294 Query 1818134 CTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTGACGCG 1818193 || || || | | ||| ||||| ||||||| | ||| |||| || | ||| || Sbjct 429295 CTGATCGATACGCAAATTGGGATCGGGTGTGATGACTGTGCGGGCGGAGAAATCGACACG 429354 Query 1818194 CTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCTCCACGAGGCC 1818253 |||||||| ||||||| || || ||||||||||||||||||| ||| || || | | Sbjct 429355 TTTGCCCATCAAATTGCCACGAATTCTGCCCTCCTTGCCCTTGAGACGCGCCTTGATGGC 429414 Query 1818254 CTTGGTGGGCTTGCCCGAC 1818272 || ||| || |||||| Sbjct 429415 TTTTAGGGGTTTACCCGAC 429433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177258241612746