Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5134 244 1e-59 seq5516 114 2e-20 >seq5134 Length=897107 Score = 244 bits (270), Expect = 1e-59 Identities = 1192/1872 (64%), Gaps = 32/1872 (2%) Strand=Plus/Plus Query 68365 TTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCG 68424 ||||||| ||| ||||| || | | || || ||||| || || || ||||| || Sbjct 539121 TTATCCACTGTGAACTGGATAGCATTTGCAGCCGGCTTTGTGCGCAGGTAATACATCCCT 539180 Query 68425 GTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGA 68484 ||||| ||||| |||| || || || || || || || ||| | || Sbjct 539181 GTTTTGAGACCAGCTTTCCAGGAATAAAAGTGTATGGACGTCAGCTTTCCGTAATTCGGC 539240 Query 68485 TCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCC 68544 || || | ||||||||| | ||| ||||| || || ||||| || || | |||||| ||| Sbjct 539241 TCTGCCACATGAATATTGAACGACTGACTCTGGTCTATGAACGCACCCCGATCTGCGGCC 539300 Query 68545 ATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTT--AAAAATCTGTTTGATAT 68602 ||||| || | ||| | |||||||| | ||||| | | ||| || | Sbjct 539301 ATTTTAATGGTGGACTTCACCGAGATTTCCCACACGGTCTTGTACAGATCGC---GA-AC 539356 Query 68603 CATCTGG---AAGG-CTCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTT 68657 | ||||| | || |||| ||||||| ||||| || | || || || ||||| Sbjct 539357 CTTCTGGGGAATGGACTCGATATTTTGGATGGAGCCCCTGCTCGAGATGATCTGGTTCTT 539416 Query 68658 GATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTAT 68717 || || || | |||||| | |||||||| | || || | ||| | ||||| | Sbjct 539417 CATGTCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTCAGCAAATGATGGTTAACCAC 539476 Query 68718 TTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 68777 || || || ||||| | ||| | | ||||||||||| |||| || || || | || Sbjct 539477 CTGGAACTCGCCAGACAGCACGCGCCTGGTGTAAATATTTGTGGTGTAGGGCTCGAAGGA 539536 Query 68778 TTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACT 68837 ||| || || |||| || |||||||| || || || ||||| || || || | | Sbjct 539537 TTCGTTGTTGCCCATTATCTGAGCAGTAGAGGCCGTGGGCATGGGAGCGACAAGCAGGGA 539596 Query 68838 ATTTCTAAGACCATG-TGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAG 68896 || | | ||| || || | |||| || || || | || ||| ||||| |||| | Sbjct 539597 GTTCCGGACACCGTGCTGCT-TGATGGACTCCTTCAGTTTTTGCCAGTCCCACAGATTCG 539655 Query 68897 ATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTAT 68956 ||| | | ||| | ||||| || |||||||| || || | || | | Sbjct 539656 TTGGCTCCTTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCCTCGT 539715 Query 68957 ATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAAT 69016 | ||||| || |||||||| | || ||||| || || || || | || ||||| | Sbjct 539716 AGGTTTCGTAGGGTCCTTCGATCTGCGCCAGTTCGCAGCTGGCTTCCAGGGCGCCGTAGT 539775 Query 69017 AAATTGTTTCGAAAATCTTCTTATT-GAGA-TCTTGTGCTTCTAGACTATCGAATGGATA 69074 | || || ||||| |||| || || ||| | || || || | || || | || | Sbjct 539776 AGATGGTCTCGAATATCTGCTGGTTCAAGAGGCCTG-CCTCCTCG-CTTTCATAGGGGAA 539833 Query 69075 ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCT 69134 | | ||||| | || || || ||||||||||| || || || | ||| | ||| || Sbjct 539834 TCGCATGAGAATCAGGGCGTCAGCGAATCCCTGAACACCGATGCCCACAGGGCGATGCCT 539893 Query 69135 CTTATTTGAACTT-TCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAA 69193 | | ||| |||| | || ||||| | |||||| | || || || || || || || | Sbjct 539894 C-AAGTTGGACTTCTTTGCCTCTGGCAGGGGATAAAAGTTGATGTCGATGATCTTGTTGA 539952 Query 69194 GA-TTTCGGACTACTACTT--TAACCACGTCCTTTAGTTTGAGAAAATCAAA--TCGTC- 69247 || ||| || | | ||| || || ||||| || || || ||| | || || Sbjct 539953 GATTTTTGGTCACCGTCTTGGTA---ACTTCCTTGAGCTTCTTGAAGTCATACGTCTTCT 540009 Query 69248 CATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAG 69307 | | | ||||||||||| || || | || || | || || || || | ||||| || Sbjct 540010 CGGGTGTGACAAACATATTGAGGGCGATCGAGGCCAAGTTGCAGACGGCAATCTCATCAG 540069 Query 69308 AATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTT 69367 | || | | || || || || | || || || ||||| || || | ||| | Sbjct 540070 GCGAGGAGTACTCGACGATTTCGGTGCACAAGTTGCTGCACTTGATGGTGCCGACATTCT 540129 Query 69368 GCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAA 69427 |||| || ||||| ||| ||||| |||||| | || || | || | |||||||| | Sbjct 540130 GCTGGTTGCTCTTCCGGTTGCAGGCATCCTTGAACAGCATGTAGGGGTTCCCAGTTTCCA 540189 Query 69428 TCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTA--TTACGGTCTTGTAACG 69485 ||||| || || || | ||||| | | ||| || | | ||| ||| ||| Sbjct 540190 CCTGAGCCTCAATGATGGCGAACCAAAGGGACTGAGCCTTCACCGTTCGG--TTGGCACG 540247 Query 69486 CTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAA 69545 ||||| || || | || | || |||||| ||||| ||||| ||||| | | Sbjct 540248 ACCCTCTTGCTCGTACTTCTCGTACAACCTTTCGAACTCATCGCCCCACACATCGTGAAG 540307 Query 69546 TCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCAT 69605 || || |||| | || ||||| | ||||| | ||| ||| || || ||||| Sbjct 540308 GCCGGGGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCGACGCGCTTCAT 540367 Query 69606 AAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC 69665 ||| |||||||| ||||| || || || ||||| | || | || || || || || Sbjct 540368 AAAGAGATCGGGTATCCACAGGGCGTAGAACAGATCGCGGGCGCGGTTCTCCTCCTTGCC 540427 Query 69666 TGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 69725 || || || || || || || ||||| | | || || ||||| || || || || || Sbjct 540428 GGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCCAGGTAAAT 540487 Query 69726 CGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATA 69785 || | | | || || || || || |||||||| | || | || || || | Sbjct 540488 GGCAAAGGCGCCGGGACGCTTGCCGCCGCCCTGATCCACATAACGTGCCACATTGTTGAA 540547 Query 69786 GACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCC 69845 ||| |||||||| |||| | ||||| || | || || || || |||| | | || Sbjct 540548 GACCCTCAGCATGGGAACGAGGCCATTGGAGGTGCCGTTCGTGCCGCAAATCGAGGTGCC 540607 Query 69846 TCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGC 69905 | || || || | | ||| || || || || ||| || ||||| | || Sbjct 540608 CTTCGCCCGGATGCAGTGGACATTTAGCCCGATGCCGCCAGCCGACTTCGAGATCATGGC 540667 Query 69906 ACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAA 69965 || | | || | | | || ||||| ||| || | ||||| | || || || Sbjct 540668 GCACTGCTCCACGGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTGAGGAGGAA 540727 Query 69966 ACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGT 70025 ||| |||| || | | | || | || ||| | ||| || || || || || Sbjct 540728 ACACGAGGACAGCTGCGGCCGATTCGTGGCAGCGGCAAAAAGTGTGGGCGACGCATGGGT 540787 Query 70026 GAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATG 70085 ||| | || || | ||||| || ||||| | |||| || |||||| | || Sbjct 540788 GAAGTAACGCTCCGACAAGAGATTATACGTTTCCACGGCTGCATCGATATCCTCCCCGTG 540847 Query 70086 AATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT 70145 ||||| ||||| || ||||||| ||| ||||| || || || | | || ||| | Sbjct 540848 TATTCCGATCGCCACGCGCATCAGCATGTGCTGCGGGCGCTCGGCGATCTTGCCGTTTCT 540907 Query 70146 TTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCT 70205 |||| || || || ||| || || || |||||||| |||||||| |||||| | Sbjct 540908 CTTCAGCAAATAGGAACGTTCGAGGGTCTTGAACCCAAAGTAGTTGTACCCAAAGTCGCG 540967 Query 70206 TTCGTAAATAAT 70217 |||||||| || Sbjct 540968 ATCGTAAATTAT 540979 >seq5516 Length=367667 Score = 114 bits (126), Expect = 2e-20 Identities = 307/465 (66%), Gaps = 6/465 (1%) Strand=Plus/Plus Query 39317 ACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 39376 |||||||| ||||| || || || ||||| || || || || ||||| |||| Sbjct 269685 ACTCCCATACGCTGGTACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCGTCCAGC 269744 Query 39377 GATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAAT 39436 || || | |||||||| | || || || | | ||| || | || | || ||| Sbjct 269745 GAGATCATCTCCATGAAGTTGAAGGGGTTCTTCGTATTGTAGATCTTGCCGACGCCCAAT 269804 Query 39437 TCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATT 39496 || | ||| | ||| || || || || ||||| ||||| || |||||||| Sbjct 269805 TCCACCAGCAAGCGATCCGCCACGAACTCGATGTACTGCGACATCAGATCGCAATTCATG 269864 Query 39497 CCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCT 39556 || ||||| || || || || || || || || ||||| | ||| ||| | || || ||| Sbjct 269865 CCGATGAGGTTCACGGGCAGGGCATCGGTGAGGAACTCCTGTTCAATGGCCACTGCATCT 269924 Query 39557 GTTATTATCG--ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTA 39614 || ||| ||| | | ||| | ||| | |||| || || | ||||| | Sbjct 269925 CGGATGATCTCAATGATGCG--CTCGCGGCGGGGTCGCTGCACCAAGTGCTGGAACATCA 269982 Query 39615 AGCA-GGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||| ||| ||||| || || |||||||| |||| || | ||||| || || || Sbjct 269983 -GCACGGCAAAGTCGCAGTGAAGGCCCTCGTCTCGGGAGATAAGCTCGTTGGAGAAGGTC 270041 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAG 39733 ||||| ||||| ||||| ||||| || ||||| || |||| || || || ||| Sbjct 270042 AGTCCCGGCATCAGACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAG 270101 Query 39734 AAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA 39778 |||||||| || || || || || |||| | | ||||||| || Sbjct 270102 AAGATGCCCTCGACGGCAGCGAAGGCAATGATGCGCTCTCCGAAA 270146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686859574398120