Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5134 244 9e-60 seq5136 111 1e-19 seq3746 111 1e-19 >seq5134 Length=897107 Score = 244 bits (270), Expect = 9e-60 Identities = 1009/1572 (64%), Gaps = 41/1572 (3%) Strand=Plus/Plus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || || ||||| || || ||||| | |||||||| ||||||| |||||||| ||| Sbjct 539121 TTATCCACTGTGAACTGGATAGCATTTGCAGCCGGCTTTGTGCGCAGGTAATACATCCCT 539180 Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGGTAATTGGGT 130525 |||||||| ||| ||| |||| ||| ||| || || |||||| || Sbjct 539181 GTTTTGAGACCAGCTTTCCAGGAATAAAAGTGTATGGACGTCAGCTTTCCGTAATTCGGC 539240 Query 130526 TGCGCCAC--GAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAG 130583 | ||||| |||||| ||| ||| || || || || || || |||| ||||| | Sbjct 539241 TCTGCCACATGAATAT--TGAACGACTGACTCTGGTCTATGAACGCACCCCGATCTGCGG 539298 Query 130584 CCATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGT 130643 |||| | | ||| || || ||||| |||||||||| ||||| | || | Sbjct 539299 CCATTTTAATGGTGGACTTCACCGAGATTTCCCACACGGTCTTGTACAGATCGCGAACCT 539358 Query 130644 GTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGCA 130703 | ||| ||| | | || ||| | | || || | | || || | ||| || Sbjct 539359 TCTGGGGAATGGACTCGATATTTTGGATGGAGCCCCTGCTCGAGATGATCTGGTTCTTCA 539418 Query 130704 TACTTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATTT 130763 | | || |||| | |||| || || | | |||||||| |||| | | Sbjct 539419 TGTCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTCAGCAAATGATGGTTAACCACCT 539478 Query 130764 GAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATT 130823 | || || |||| ||| ||||| || |||||| || | ||| | || || ||||||| Sbjct 539479 GGAACTCGCCAGACAGCACGCGCCTGGTGTAAATATTTGTGGTGTAGGGCTCGAAGGATT 539538 Query 130824 CGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAAT 130883 |||||||||| | ||| || || |||| || ||||||||| || || | || || | Sbjct 539539 CGTTGTTGCCCATTATCTGAGCAGTAGAGGCCGTGGGCATGGGAGCGACAAGCAGGGAGT 539598 Query 130884 TACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAG 130943 | || | ||||||| | |||| ||||| || | ||| ||||| ||| || | Sbjct 539599 TCCGGACACCGTGCTGCTTGATGGACTCCTTCAGTTTTTGCCAGTCCCACAGATTCGTTG 539658 Query 130944 GTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTCGA 131003 | | | |||| |||||| || | || || || || || || |||| ||| ||| Sbjct 539659 GCT---CCTTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCCTCGT 539715 Query 131004 ACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAAT 131063 | | ||||||| |||||||| | ||||| ||| ||| ||||||| || ||||| | Sbjct 539716 AGGTTTCGTAGGGTCCTTCGATCTGCGCCAGTTCGCAGCTGGCTTCCAGGGCGCCGTAGT 539775 Query 131064 AAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATT 131123 | ||||| ||| || || | || || | || | | ||| || || || ||| Sbjct 539776 AGATGGTCTCGAATATCTGCTGGTTCAAGAGGCCTGCCTCCTCGCTTTCATAGGGGAATC 539835 Query 131124 TCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTTTTA 131183 ||| | ||| | ||||| |||| ||||| | || | |||||| || | ||| | | Sbjct 539836 GCATGAGAATCAGGGCGTCAGCGAATCCCTGAACACCGATGCCCACAGGGCGATGCCTCA 539895 Query 131184 AATTACATTTACGCGAACATTCGG--TGGGATAAAGGTTAATGTCAATTATTTTGTTTAA 131241 | || | || | | | || |||||||| ||| ||||| || || ||||| | Sbjct 539896 AGTTGGACTTCTTTG--CCTCTGGCAGGGGATAAAAGTTGATGTCGATGATCTTGTTGAG 539953 Query 131242 A---TTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAGT 131298 | ||| ||| | ||| || || || | || | ||| ||| |||| | Sbjct 539954 ATTTTTGGTCAC--CGTCTTG-GTAACTTCCTTGAGCTTCTTGAAGTCATACGT---CTT 540007 Query 131299 TTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTC 131358 ||| | | ||||| ||| | || || |||| || || || || | || || Sbjct 540008 CTCGGGTGTGACAAACATATTGAGGGCGATCGAGGCCAAGTTGCAGACGGCAATCTCATC 540067 Query 131359 ATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATT 131418 | | | |||| || ||||||| |||||| || |||| ||| |||||||| | ||| Sbjct 540068 AGGCGAGGAGTACTCGACGATTTCGGTGCACAAGTTGCTGCACTTGATGGTGCCGACATT 540127 Query 131419 TTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGGCGTGCCCGTTT 131477 || || ||||| || | | || | |||||| ||| ||||||||| | || |||| Sbjct 540128 CTGCTGGTTGCTCTT-CCGGTTGCAGGCATCCTTGAACAGCATGTAGGGGTTCCCAGTTT 540186 Query 131478 CGACTTGAGTTTCAATAATG--TATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGTA 131535 | || |||| ||||| ||| | | |||| | | |||| || | || Sbjct 540187 CCACCTGAGCCTCAATGATGGCGAACCAAAGGGACT--GAGC-----CTTCACCGTTCGG 540239 Query 131536 TTGGC-CG--CGTTTT--TCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAA 131590 ||||| || | | || ||||| || ||||||||| |||| || | | ||| || | Sbjct 540240 TTGGCACGACCCTCTTGCTCGTACTTCTCGTACAACCTTTCGAACTCATCGCCCCACACA 540299 Query 131591 CTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACT 131650 || | ||| |||| | ||| ||||| |||||||| |||| || || || Sbjct 540300 TCGTGAAGGCCGGGGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCGACG 540359 Query 131651 CGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCT 131710 ||||||||||| | ||| || | ||| | ||||| |||||||| | || ||||| Sbjct 540360 CGCTTCATAAAGAGATCGGGTATCCACAGGGCGTAGAACAGATCGCGGGCGCGGTTCTCC 540419 Query 131711 TCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCC 131770 || | || | | || |||| | | || || || | ||||| |||||||| ||| Sbjct 540420 TCCTTGCCGGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCC 540479 Query 131771 AAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGACGAACCATG 131827 | || | || | ||||| ||||| ||||| |||| |||| ||| ||| Sbjct 540480 AGGTAAATGGCAAAGGCGCCGGGACGCTTGCCGCCGCCCTGATCCACATAACGTGCCACA 540539 Query 131828 TTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATG 131887 |||||| | || | || |||||| | | || |||| | | || || |||| ||| Sbjct 540540 TTGTTGAAGACCCTCAGCATGGGAACGAGGCCATTGGAGGTGCCGTTCGTGCCGCAAATC 540599 Query 131888 TAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGA 131946 || |||| || || | ||| ||| || || || || || || || |||| | || || Sbjct 540600 GAGGTGCCCTTCGCCCGGATGCAGTGGACATTTAGCCCGATGCCGCCAGCCG-ACTTCGA 540658 Query 131947 GATTAGTGCGCA 131958 ||| | ||||| Sbjct 540659 GATCATGGCGCA 540670 >seq5136 Length=173398 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | || | ||||| || || || || || || || || ||||||||| | Sbjct 114979 CCTCCGCGAAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 115038 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || |||| || || || || |||||| | ||||||||||| ||||| || || Sbjct 115039 AGAGTACGTCCGTCCTCCAGTTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGA 115098 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||||| ||||| ||||||| || | | || | ||||| | |||| || || Sbjct 115099 ATTCCCTCCTTATCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCGGATGGC-TCGAC 115157 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || | ||| || |||| ||| ||||| ||||||||||| Sbjct 115158 TTCCAGGGTGATGGTTTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 115205 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||| | || | |||||||| | || || || || || || ||||||||| Sbjct 116801 TGCCTCCGCGGAGACGGAGAACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 116860 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| | ||||||||||| || |||||| | || | ||||| || || || | Sbjct 116861 ACAGGGTGCGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGG 116920 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | |||||| ||||| ||||||| |||| | || | || || | |||| || Sbjct 116921 GAATACCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCCA 116980 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || || | ||||| |||| || ||||||||||| ||||| Sbjct 116981 CCTCCAAG-GTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 117029 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | |||||||| | ||||| || || || || ||||| ||| | Sbjct 115891 CCTCCACGAAGACGGAGGACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGGAC 115950 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| || || ||||| || ||| | ||||||||||| ||||| || || Sbjct 115951 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCAGCGAAGATGAGACGCTGCTGATCTGGAGGG 116010 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||||| || || ||||||| || | | || | ||||| | |||| || || Sbjct 116011 ATTCCCTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCGGATGGC-TCGAC 116069 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || | || || |||| ||| ||||| ||||| ||||| Sbjct 116070 TTCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 116117 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||||| || || ||||| ||||| || | ||||| | ||||| Sbjct 116365 ACCAAATGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGCCCATCTTCA 116424 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | || | |||||| ||||| || || | ||||| || || | Sbjct 116425 AGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGG 116484 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTATAGATTT 27217 || ||| ||| | | || | ||||| | ||||| | ||||| || || || | || Sbjct 116485 ATTTTGGCTTTTACATTCTCAATTGTGTCGGATGGCT-CGACTTCCAGGGTGATGGTCTT 116543 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| ||||| || ||||||||||| |||||| Sbjct 116544 GCCAGTCAGCGTCTTCACAAAGATCTGCATA 116574 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||||| || | || ||||| | || || || || ||||| |||||||| Sbjct 116575 CCACCGCGCAGACGGAGGACTAAATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAA 116634 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| |||| || || ||||| |||||| | || | ||||| ||||| || || Sbjct 116635 AGAGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGGGGA 116694 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||| || || | | |||| | ||||||| | ||||| Sbjct 116695 ATTCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTTTCAATGGTGTCTGAAGGCTCAACC 116754 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | |||||| || || || ||||||||||| ||||| Sbjct 116755 TCCAGGGTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 116801 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| |||||||| || || || || || || || |||||||| | | || | Sbjct 115447 CGCAACACCAAATGCAAAGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCA 115506 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || ||||| || || ||| ||||||||||||| ||||| || || | ||||| || Sbjct 115507 TCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTG 115566 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| || |||| | || | || || | || || || || || || || Sbjct 115567 TCTTGGATTTTAGCCTTCACATTCTCAATCGTATCAGAGGGCTCGACCTCCAGGGTGATT 115626 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | |||||| || || || ||||| ||||| |||||| Sbjct 115627 GTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCATA 115662 >seq3746 Length=358675 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||||| || | ||||| || | || || || || || || ||||||||| | Sbjct 174170 CCACCGCGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 174229 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| || ||||| || |||||| | || |||||||| |||||||| || Sbjct 174230 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGG 174289 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGT-GGCTTCAAC 27199 | ||||| || || ||||||| || | | || | ||||| | |||| || | Sbjct 174290 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACC 174349 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | | || || || | ||||| || || |||||||||||||||||||| Sbjct 174350 TCCAAG-GTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 174396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424904709435096