Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq5516 95.1 4e-14 >seq5516 Length=367667 Score = 95.1 bits (104), Expect = 4e-14 Identities = 347/533 (65%), Gaps = 24/533 (5%) Strand=Plus/Minus Query 443337 TTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTA 443396 || ||||| |||||||| | ||||| ||||||||| || |||| ||| || || || Sbjct 270505 TTCTGGACAGTGGAGGAGGTGGATCTGTCCAAGGACCTGACCGACTGGCAC---CGCCTG 270449 Query 443397 TCTAGCCATGAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGT 443456 | || ||| | ||| || | | |||||||||| || | ||| || Sbjct 270448 AAGGATGACGAGCGCCACTTCATCTCGCACGTGCTGGCCTTCTTCGCCGCCTCCGATGGC 270389 Query 443457 ATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGAGGCCCGC 443516 ||||| |||||| ||||| ||| ||| | | ||| | ||| ||||| ||| Sbjct 270388 ATCGTAAATGAGAACCTGGTCGAGCGCTTCAGCCAGGAGGTTCAGATCACGGAGGCACGC 270329 Query 443517 TACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTG 443576 | |||||||| |||||| ||| ||||||||| | ||| | ||| | |||||| | || Sbjct 270328 TGCTTCTACGGCTTCCAAATCGCCATGGAGAACGTGCACTCGGAGATGTACAGTGTGCTG 270269 Query 443577 ATCAAGACACTAATTCCGAACGAAGACGAAC-AGCGGTCC-ATCTTCTCATCGT--TCAT 443632 ||| | ||| || |||| | | || || ||||| | || ||| || || Sbjct 270268 ATCGACACA-TACATCCG---GGACCCGCACCAGCGGGAATACCTGTTCAACGCCATCGA 270213 Query 443633 GACCACGCCAGGCATCACTGAA----AAGACTCGCTGGGCAAAACAGTGGCTCGAACGAG 443688 ||| | ||| | | |||| ||| | |||||| ||| || | Sbjct 270212 GACGATGCCGG----CTGTGAAGCGCAAGGCGGACTGGGCTCTTTCCTGGATCT--CCTC 270159 Query 443689 AAAATCT--CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTT 443746 || || || |||| ||||| | | || || |||| ||||| || | || || Sbjct 270158 CAAGTCGGCCAATTTCGGAGAGCGCATCATTGCCTTCGCTGCCGTCGAGGGCATCTTCTT 270099 Query 443747 TAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGA 443806 ||||||||| || |||||||| |||||| |||| ||||| || || |||| || |||| Sbjct 270098 CAGCGGCAGC-TTCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGACTGA 270040 Query 443807 CCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCC 443859 |||| ||||| || ||| || |||||||| | || |||||||| ||| Sbjct 270039 CCTTCTCCAACGAGCTTATCTCCCGAGACGAGGGCCTTCACTGCGACTTTGCC 269987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588219330268185