Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5134 150 2e-31 seq5325 111 2e-19 >seq5134 Length=897107 Score = 150 bits (166), Expect = 2e-31 Identities = 584/907 (64%), Gaps = 17/907 (2%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| || ||||| ||||| || || ||| |||| || || |||| || || || || || Sbjct 539507 GTAAATATTTGTGGTGTAGGGCTCGAAGGATTCGTTGTTGCCCATTATCTGAGCAGTAGA 539566 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 ||| || ||||| || || | | || ||| || | ||| | || ||||||| || Sbjct 539567 GGCCGTGGGCATGGGAGCGACAAGCAGGGAGTTCCGGACACCGTGCTGCTTGATGGACTC 539626 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTT-CACCTT--CCCACATGTCAAACTG 110883 ||| || | |||||| | || || ||| | |||| |||||||||| |||| Sbjct 539627 CTTCAGTTTTTGCCAGTCCCAC---AGATTCGTTGGCTCCTTGTCCCACATGTCGTACTG 539683 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 || | || | | | |||| ||||| ||||||| |||| |||| | | || Sbjct 539684 CAGAATTCCCTTGCTCACGGGGCTGCCCTCGTAGGTTTCGTAGGGTCCTTCGATCTGCGC 539743 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 || ||| ||||| || ||||||| ||| || ||||| || || || | |||| Sbjct 539744 CAGTTCGCAGCTGGCTTCCAGGGCGCCGTAGTAGATGGTCTCGAATATCTGCTGGTTCAA 539803 Query 111004 CT--CCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGA 111061 ||| || || || ||| | | | | || | ||| | | || |||| Sbjct 539804 GAGGCCT--GCCTCCTCGCTTTCATAGGGGAATCGCATGAGAATCAGGGCGTCAGCGAAT 539861 Query 111062 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-AC 111120 || |||||||| | || | ||| | || | || || ||||| || ||| | Sbjct 539862 CCCTGAACACCGATGCCCACAGGGCGATGCCTCAAGTTGGACTTCTTTGCC-TCTGGCAG 539920 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 ||||||||| || |||| |||| ||| ||||||||||| || |||| || | ||| Sbjct 539921 GGGATAAAAGTTGATGTCGATGATCTTGTTGAGATTTTTGGTCACCGTCTTGGTAACTTC 539980 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGAT 111240 | || || | | ||| | || |||| ||||| || | |||||||| Sbjct 539981 CTTGAGCTTCTTGAAGTCATACGTCT---TCTCGGGTGTGACAAACATATTGAGGGCGAT 540037 Query 111241 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 111300 || ||||| ||||| || || ||||||| | |||||| | ||||| || || Sbjct 540038 CGAGGCCAAGTTGCAGACGGCAATCTCATCAGGCGAGGAGTACTCGACGATTTCGGTGCA 540097 Query 111301 TAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATC 111360 |||||| | ||| || || || | ||||| ||||| |||||| |||||| ||||| Sbjct 540098 CAAGTTGCTGCACTTGATGGTGCCGACATTCTGCTGGTTGCTCTTCCGGTTGCAGGCATC 540157 Query 111361 CTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA- 111419 |||| | ||||||||||| |||| || ||| ||| | | | || || ||||| Sbjct 540158 CTTGAACAGCATGTAGGGGTTCCCAGTTTCCACCTGAGCCTCAATGATGGCGAACCAAAG 540217 Query 111420 CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGG 111479 | | | || || | |||||| || ||||| ||||||||| ||| | Sbjct 540218 GGACTGAGCCT-TCACCGTTCGGTTGGCACGACCCTCTTGCTCGTACTTCTCGTACAACC 540276 Query 111480 CTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAG 111539 ||| ||||| || ||| | | ||| || || || |||| || || | || | Sbjct 540277 TTTCGAACTCATCGCCCCACACATCGTGAAGGCCGGGGCATTTGTGGGGGCACATGAGCG 540336 Query 111540 ACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 111599 |||| | ||| |||| || |||||||| || || || || |||||||||| | | Sbjct 540337 ACCAATCGCCATTGGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCACAGGGCGTAGA 540396 Query 111600 AGAGATC 111606 | ||||| Sbjct 540397 ACAGATC 540403 >seq5325 Length=269097 Score = 111 bits (122), Expect = 2e-19 Identities = 184/263 (70%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865 ||||| || ||| | | || ||||| || ||||| | ||||| || || ||||| ||| Sbjct 224397 TCTTTGCCGCCCGTCAAGCGAGTACCGAACTGACCGCGCGGCTCCAGCAGATTAATATTG 224456 Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCACC 181924 || | || | ||| | ||||| ||||||||||| ||| || || || || ||||| Sbjct 224457 TTGGCGCCCACAAAGTTCTGGGCCAGATTAACGATGGTCATCTGC-AGCGAAACCTCACC 224515 Query 181925 GTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATC 181984 ||| ||||| || ||| | || || || | ||| || ||| |||||||||| || Sbjct 224516 GTGATGGTAGGCCGACATCTCGGCCACCGAACCCGACAGCTGGGCCACCTTCACCTCTCG 224575 Query 181985 TTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044 ||| |||| | | |||||| | ||||||| || | ||| ||||| | ||| || Sbjct 224576 CTTGTCGTTCCTCTTGAAGCAGGTGAACATCACCTTGCGCTGACCCGGCTTCAAACCGTC 224635 Query 182045 CGCCATATGGGCAATAGAGCGCT 182067 | ||| | || ||| ||||||| Sbjct 224636 CACCAGACTGGGAATGGAGCGCT 224658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627986993656800