Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5134 194 2e-44 seq5516 168 8e-37 seq5325 118 1e-21 >seq5134 Length=897107 Score = 194 bits (214), Expect = 2e-44 Identities = 729/1131 (64%), Gaps = 17/1131 (2%) Strand=Plus/Plus Query 117960 CCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAG 118019 |||||||| || ||||| | ||| ||||| | |||||||||||| ||| |||| Sbjct 539286 CCCCGATCTGCGGCCATTTTAATGGTGGACTTCACCGAGATTTCCCACACGGTCTTGTAC 539345 Query 118020 AGGTTCTTAATATCATCTGGGATATCCAC--GATATTTTGGATGGATCCACCCGC-CTTG 118076 || | || | |||||| || || ||||||||||||||| || || || | | Sbjct 539346 AGATCGCGAACCT--TCTGGGGAATGGACTCGATATTTTGGATGGAGCC-CCTGCTCGAG 539402 Query 118077 ACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGA 118136 | || | | |||||| || | ||| | | | || | || ||| || | | Sbjct 539403 ATGATCTGGTTCTTCATGTCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTCAGCAAA 539462 Query 118137 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTG 118196 || | || || || ||||| || | || ||| || || ||||| || ||| Sbjct 539463 TGATGGTTAACCACCTGGAACTCGCCAGACAGCACGCGCCTGGTGTAAATATTTGTGGTG 539522 Query 118197 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 118256 || ||||| ||| | || ||||| |||| || || || || ||||| ||||||||||| Sbjct 539523 TAGGGCTCGAAGGATTCGTTGTTGCCCATTATCTGAGCAGTAGAGGCCGTGGGCATGGGA 539582 Query 118257 GCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAG 118316 || | || ||| ||| |||| ||| | | | | ||| ||||| || | |||| Sbjct 539583 GCGACAAGCAGGGAGTTCCGGACACCGTGCTGCTTGATGGACTCCTTCAGTTTTTGCCAG 539642 Query 118317 TCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCT 118376 || | | ||| |||| | |||||| || |||| || || || | | | | Sbjct 539643 TCCCACAGATTCGTTGGCTCCTTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACG 539702 Query 118377 GGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG 118436 || ||||| | || || || || || || | || ||||| |||| |||| || || Sbjct 539703 GGGCTGCCCTCGTAGGTTTCGTAGGGTCCTTCGATCTGCGCCAGTTCGCAGCTGGCTTCC 539762 Query 118437 AGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCA--TTGCCTTGGCCTCGTCGG 118494 ||||| ||| || || || || || || | |||| |||| ||||| ||| Sbjct 539763 AGGGCGCCGTAGTAGATGGTCTCGAATATCTGCTGGTTCAAGAGGCCT--GCCTCCTCGC 539820 Query 118495 AATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAA 118554 ||| | | || ||| | ||| | | || |||| || || ||||||| ||| | Sbjct 539821 TTTCATAGGGGAATCGCATGAGAATCAGGGCGTCAGCGAATCCCTGAACACCGATGCCCA 539880 Query 118555 TTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCT-CCACGGGATAAAAATTCCTATCG 118613 |||||||| |||| || |||||| || ||| || ||||||||| || | ||| Sbjct 539881 CAGGGCGATGCCTCAAGTTGGACTTCTTTGC-CTCTGGCAGGGGATAAAAGTTGATGTCG 539939 Query 118614 ATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCA 118673 || | | | || ||||||||||| || ||| || | ||| | ||||| | | | ||| Sbjct 539940 ATGATCTTGTTGAGATTTTTGGTCACCGTCTTGGTAACTTCCTTGAGCTTCTTGAAGTCA 539999 Query 118674 AAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACA 118733 | | |||| ||||| || || |||||||| || |||| || || || Sbjct 540000 TACGT---CTTCTCGGGTGTGACAAACATATTGAGGGCGATCGAGGCCAAGTTGCAGACG 540056 Query 118734 GAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATG 118793 | ||||||| | |||||| | ||||| ||||||||||| | ||| ||| Sbjct 540057 GCAATCTCATCAGGCGAGGAGTACTCGACGATTTCGGTGCACAAGTTGCTGCACTTGATG 540116 Query 118794 GTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGC 118853 ||||| | |||| || || ||| ||| || ||||||||| | |||||||| || Sbjct 540117 GTGCCGACATTCTGCTGGTTGCTCTTCCGGTTGCAGGCATCCTTGAACAGCATGTAGGGG 540176 Query 118854 GTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTG 118913 |||| || ||| || | || | || || ||| | ||| ||| || Sbjct 540177 TTCCCAGTTTCCACCTGAGCCTCAATGATGGCGAACCAAAGGGACTGAGCCTTCACCGTT 540236 Query 118914 GCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACG 118973 |||||| || ||||||| ||||||||| ||| | ||| ||||| || ||| Sbjct 540237 CGGTTGGCACGACCCTCTTGCTCGTACTTCTCGTACAACCTTTCGAACTCATCGCCCCAC 540296 Query 118974 GCCTC-TGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTC 119032 | || ||| || || || || | ||||| | ||| ||||| | ||| |||| Sbjct 540297 ACATCGTGA-AGGCCGGGGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTC 540355 Query 119033 AACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCG 119083 || |||||||| ||||| || || ||||| || || |||| ||||| || Sbjct 540356 GACGCGCTTCATAAAGAGATCGGGTATCCACAGGGCGTAGAACAGATCGCG 540406 >seq5516 Length=367667 Score = 168 bits (186), Expect = 8e-37 Identities = 309/444 (70%), Gaps = 8/444 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || ||| |||||| |||||||| ||||| ||||||| ||| ||||||| Sbjct 269700 TACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCCATG 269759 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT--TGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 || | || |||||||| | || | || ||| | | | ||||| | || | | Sbjct 269760 AAGTTGAAGGGGTTCTTCGTATTGTAGATCTTGCCGACGC-CCAAT-TCCACCAGCAAGC 269817 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 |||||| ||| |||| ||||||| |||||| ||| | ||||| ||||||||||| | Sbjct 269818 GATCCGCCACGAACTCGATGTACTGCGACATCAGATCGCAATTCATGCCGATGAGGTT-C 269876 Query 129906 ATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 | ||| || || || || |||| ||| |||||| |||| || || || | ||| | Sbjct 269877 ACGGGCAGGGCATCGGTGAGGAACTCCTGTTCAATGGCCACTGCATCTCGGATGATCTCA 269936 Query 129965 TGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACTC 130023 ||| ||| || |||| ||| | |||| || ||| | ||||||||| || Sbjct 269937 ATGATGCGCTCGCGGCGGGGTC-GCTGCACCAAGTGCTGGAACATCAGCACGGCAAAGTC 269995 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| || |||||||| |||||||| || || || |||||| ||| || ||||| || Sbjct 269996 GCAGTGAAGGCCCTCGTCTCGGGAGATAAGCTCGTTGGAGAAGGTCAGTCCCGGCATCAG 270055 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||||| ||||||||| | || ||| ||||||||| ||||| || Sbjct 270056 ACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCGAC 270115 Query 130144 ACACGCGAACGCAAAGAGACGCTC 130167 ||||| |||| || ||||| Sbjct 270116 GGCAGCGAAGGCAATGATGCGCTC 270139 >seq5325 Length=269097 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 179064 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 179123 ||||||||| ||| | | || || || || ||||| | ||||| || ||||| ||||| Sbjct 224396 ATCTTTGCCGCCCGTCAAGCGAGTACCGAACTGACCGCGCGGCTCCAGCAGATTAATATT 224455 Query 179124 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 179182 ||| | |||| ||| | ||||| || || || || ||| || || || || |||| Sbjct 224456 GTTGGCGCCCACAAAGTTCTGGGCCAGATTAACGATGGTCATCTGC-AGCGAAACCTCAC 224514 Query 179183 CGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCTCAT 179242 |||||||||| |||||| | || ||||| | ||| || ||| |||||||||| ||| Sbjct 224515 CGTGATGGTAGGCCGACATCTCGGCCACCGAACCCGACAGCTGGGCCACCTTCACCTCTC 224574 Query 179243 CCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTT 179279 |||| |||| | | |||||| | |||||||||| Sbjct 224575 GCTTGTCGTTCCTCTTGAAGCAGGTGAACATCACCTT 224611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618390881387480