Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5134 279 6e-70 seq5516 116 4e-21 seq1178 82.4 8e-11 >seq5134 Length=897107 Score = 279 bits (308), Expect = 6e-70 Identities = 922/1410 (65%), Gaps = 53/1410 (4%) Strand=Plus/Plus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 ||| || || || ||||| |||||||| | |||||||| ||||| ||||| || || || Sbjct 539507 GTAAATATTTGTGGTGTAGGGCTCGAAGGATTCGTTGTTGCCCATTATCTGAGCAGTAGA 539566 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653 ||| || |||||||| ||||| || || || ||||| | ||| ||| |||||| | Sbjct 539567 GGCCGTGGGCATGGGAGCGACAAGCAGGGAGTTCCGGACACCGTGCTGCTTGATGGACTC 539626 Query 78654 CTTTAG-----GCC-GTCCCAAA-ATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAA 78706 ||| || ||| |||||| | |||| || || | | |||||||||| || | Sbjct 539627 CTTCAGTTTTTGCCAGTCCCACAGATTCGTTGGCTCCT-TGTCCCACATGTCGTACTGCA 539685 Query 78707 GGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGA 78766 | || |||| | | | || |||| | | || ||||| | ||| || || || | Sbjct 539686 GAATTCCCTTGCTCACGGGGCTGCCCTCGTAGGTTTCGTAGGGTCCTTCGATCTGCGCCA 539745 Query 78767 GTTCGCA--TGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTT--- 78821 ||||||| || || |||||| ||| ||| | | |||||| || || ||| Sbjct 539746 GTTCGCAGCTGGCTTC--CAGGGCGCCGTAGTAGATGGTCTCGAATATCTGCTGGTTCAA 539803 Query 78822 GAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCC-GAGCATCATGAAGACATCGGCCA 78880 ||| | | ||| | | || | | ||| || ||| |||| | | || || | Sbjct 539804 GAGGCCTGCCTCCTCGCTTTCATAGGG-GAATCGCATGAGAATCAGGGCGTCAGCG---A 539859 Query 78881 GGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGG 78940 ||||| || ||||| | | || || || | || |||| ||| ||| | | | Sbjct 539860 ATCCCTGAACACCGATGCCCACAGGGCGATGCCTCAAGTTGGACTTCTTTGCCTC-TGGC 539918 Query 78941 TCGGG-TAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACC 78999 ||| |||||||| ||||||| ||| || || || || | || || Sbjct 539919 AGGGGATAAAAGTTGATGTCGATGATCTTGTTGAGATTTTTGGTCACCGTCTTGGTAACT 539978 Query 79000 TCGTACAATTTGGCGAAATCAAAATGATTTCC---TTTGATGAAAGTCGGTAGGCACAGC 79056 || | | || ||| ||| | || | | ||| || | ||| | | Sbjct 539979 TCCTTGAGCTTCTTGAAGTCATACGTCTTCTCGGGTGTGACAAACATATTGAGGGCGATC 540038 Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || |||| |||||| ||||| |||| || || || ||||| |||||| |||||| Sbjct 540039 GAGGCCAAGTTGCAGACGGCAATCTCATCAGGCGAGGAGTACTCGACGATTTCGGTGCAC 540098 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 || || ||||||||||||||| |||| ||||||||||||| ||| ||||| ||| Sbjct 540099 AAGTTGCTGCACTTGATGGTGCCGACATTCTGCTGGTTGCTCTTCCGGTTGCAGGCATCC 540158 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236 ||| | |||||| || |||| || || |||||| || | | | || ||| | | Sbjct 540159 TTGAACAGCATGTAGGGGTTCCCAGTTTCCACCTGAGCCTCAATGATGGCGAACCAAAGG 540218 Query 79237 TCCCGGGCCCGGACAACCTTC--TTGTACCGACCCTGTGCGACGTACGTCCGGTACAACT 79294 | | ||| || | ||| ||| ||||||| | ||||| || ||||||| Sbjct 540219 GACTGAGCCTTCAC--CGTTCGGTTGGCACGACCCTCTTGCTCGTACTTCTCGTACAACC 540276 Query 79295 CGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGT 79354 | ||| | || || | |||||| | ||||| ||||| | ||| |||||||| || Sbjct 540277 TTTCGAACTCATCGCCCCACACATCGTGAAGGCCGGGGCATTTGTGGGGGCACATGAGCG 540336 Query 79355 GCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGA 79414 ||| || | | ||| || || ||| ||||| || || ||||||||||| || Sbjct 540337 ACCAATCGCCATTGGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCACAGGGCGTAGA 540396 Query 79415 AGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCA 79474 | || |||||| || ||||||| | ||| |||| ||| || || || || | Sbjct 540397 ACAGATCGCGGGCGCGGTTCTCCTCCTTGCCGGTGTTCTTCTTCAGTTCCAGGAACTCAA 540456 Query 79475 TGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGC 79534 || ||| | |||||| |||||||| || ||||| || | || ||||||||||||| Sbjct 540457 AGACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCGCCGGGACGCTTGCCGCCGC 540516 Query 79535 CCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGG 79594 |||| | || || || ||| |||||||| || | |||||||| |||| ||| | || Sbjct 540517 CCTGATCCACATAACGTGCCACATTGTTGAAGACCCTCAGCATGGGAACGAGGCCATTGG 540576 Query 79595 CGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGG--AT 79652 | ||||||||| ||| || || || ||||||| || ||||||| || Sbjct 540577 AGGTGCCGTTCGTGCCGCAAATCGAGGTGCCCTTCGCCCGGAT------GCAGTGGACAT 540630 Query 79653 T----CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGA 79708 | |||||||| || | | |||| ||||| ||||||| || | | || | | | Sbjct 540631 TTAGCCCGATGCCGCCAGCCGACTTCGAGATCATGGCGCACTGCTCCACGGACTTGAAAA 540690 Query 79709 TGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT 79768 |||||||||| |||||| || |||| | || ||||| || |||| ||| || | Sbjct 540691 TGCCCTCGATGGAGTCGGCCGTCATGGTGAGGAGGAAACACGAGGACAGCTGCGGCCGAT 540750 Query 79769 TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG-AACTTTTGGCTCATCAGA 79827 |||| | ||| || || || |||| ||| || |||||| ||| | | || ||| Sbjct 540751 TCGTGGCAGCGGCAAAAAGTGTGGGCGACGCATGGGTGAAGTAACGCTCCG-ACAAGAGA 540809 Query 79828 TCGTACGTCTCCTTGACGCGCGG----GAGGTCGTCGCCGTGGATGCCGACCGCGACGCG 79883 | ||||| ||| ||| || | || || || ||||| || |||| ||| ||||| Sbjct 540810 TTATACGTTTCC---ACG-GCTGCATCGATATCCTCCCCGTGTATTCCGATCGCCACGCG 540865 Query 79884 CATGAAGAGGTACTG-GGGCGTCTCGCCGA 79912 ||| | | || ||| ||||| |||| ||| Sbjct 540866 CATCAGCATGTGCTGCGGGCG-CTCGGCGA 540894 Score = 178 bits (196), Expect = 1e-39 Identities = 499/762 (65%), Gaps = 18/762 (2%) Strand=Plus/Minus Query 19195 CTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAG 19254 |||||| || ||| |||| || ||||| ||| | ||||| |||||| |||| Sbjct 540791 CTTCACCCATGCGTCGCCCACACTTTTTGCCGCTGCCACGAATCGGCCGCAGCTGTCCTC 540732 Query 19255 CTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGA 19314 |||||||| | | |||| || ||| ||| |||||||| | | || | | || | Sbjct 540731 GTGTTTCCTCCTCACCATGACGGCCGACTCCATCGAGGGCATTTTCAAGTCCGTGGAGCA 540672 Query 19315 GTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGAT------CCACTGCTCGAATAT 19368 |||||| ||||| |||| | | || || |||||| | ||||||| || Sbjct 540671 GTGCGCCATGATCTCGAAGTCGGCTGGCGGCATCGGGCTAAATGTCCACTGC------AT 540618 Query 19369 CCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAAT 19428 |||| ||| || || || || |||||||| || | || |||| || || Sbjct 540617 CCGGGCGAAGGGCACCTCGATTTGCGGCACGAACGGCACCTCCAATGGCCTCGTTCCCAT 540558 Query 19429 GCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGG 19488 ||| | ||||||||||| ||| | || || | ||||| |||||||| || || Sbjct 540557 GCTGAGGGTCTTCAACAATGTGGCACGTTATGTGGATCAGGGCGGCGGCAAGCGTCCCGG 540498 Query 19489 CTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCG 19548 | | || ||||| ||||| ||||| |||||| |||||||| | || ||||| |||||| Sbjct 540497 CGCCTTTGCCATTTACCTGGAGCCCTGGCACTCGGACGTCTTTGAGTTCCTGGAACTGAA 540438 Query 19549 CCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCC 19608 |||| || | ||||||| ||| ||||| || ||| ||| ||||||| || Sbjct 540437 GAAGAACACCGGCAAGGAGGAGAACCGCGCCCGCGATCTGTTCTACGCCCTGTGGATACC 540378 Query 19609 GGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGA 19668 || || || ||| || || ||| | | || ||| || |||||||| ||| | Sbjct 540377 CGATCTCTTTATGAAGCGCGTCGAGGCCAATGGCGATTGGTCGCTCATGTGCCCCCACAA 540318 Query 19669 ATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTACCGGACTTACGT 19728 |||||| ||||| | ||| || | ||||| | |||| | ||||||| || |||| Sbjct 540317 ATGCCCCGGCCTTCACGATGTGTGGGGCGATGAGTTCGAAAGGTTGTACGAGAAGTACG- 540259 Query 19729 AGC-CCAGGGCCGGTTCAA--GAAGGTGGTCCGGGCCCGGGACGTCTGGGACCGCGTCCT 19785 ||| |||| || ||| ||| ||| ||| | | | | ||| | | || | Sbjct 540258 AGCAAGAGGGTCGTGCCAACCGAA--CGGTGAAGGCTCAGTCCCTTTGGTTCGCCATCAT 540201 Query 19786 CAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAA 19845 | ||||| || || || | || |||||| | |||||| ||| ||| || Sbjct 540200 TGAGGCTCAGGTGGAAACTGGGAACCCCTACATGCTGTTCAAGGATGCCTGCAACCGGAA 540141 Query 19846 GTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGA 19905 | || ||| |||| ||||| | ||||||| |||| |||| || |||||| | || Sbjct 540140 GAGCAACCAGCAGAATGTCGGCACCATCAAGTGCAGCAACTTGTGCACCGAAATCGTCGA 540081 Query 19906 GGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTC 19947 | ||| ||| || |||| |||||| || || |||| || Sbjct 540080 GTACTCCTCGCCTGATGAGATTGCCGTCTGCAACTTGGCCTC 540039 >seq5516 Length=367667 Score = 116 bits (128), Expect = 4e-21 Identities = 524/817 (64%), Gaps = 19/817 (2%) Strand=Plus/Minus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 || |||||| | || |||||| | || || || ||||||| || ||| || || Sbjct 270508 TCTTTCTGGACAGTGGAGGAGGTGGATCTGTCCAAGGACCTGACCGACTGGCACCGCCTG 270449 Query 59673 AATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGA 59732 || | ||||||| || |||||| | || |||||||||||||| || ||||| Sbjct 270448 AAGGATGACGAGCGCCACTTCATCTCGCACGTGCTGGCCTTCTTCGCCGCCTCCGATGGC 270389 Query 59733 ATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGG 59792 || || | || || | | | | ||| | |||| || ||||| | ||||| || Sbjct 270388 ATCGTAAATGAGAACCTGGTCGAGCGCTTCAGCCAGGAGGTTCAGATCACGGAGGCACGC 270329 Query 59793 TCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCAT 59851 | ||||||| | || ||| || ||| | ||||| |||| |||| | | Sbjct 270328 TGCTTCTACGGCTTCCAAATCGC-CATGGAGAACGTGCACTCGGAGATGTACAGTGTGCT 270270 Query 59852 GATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC 59911 |||||| | | || ||| ||| | || || |||||| ||||| ||||| Sbjct 270269 GATCGACACATACATCCGGGACCCGCACCAGCGGGAATACCTGTTCAACGCCATCGAGAC 270210 Query 59912 GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAG-TCC---TGGAG 59967 | || || || || | || || || ||||| | ||||| ||| | | Sbjct 270209 GATGCCGGCTGTGAAGCGCAAGGCGGACTGGGCTCTTTCCTGGATCTCCTCCAAGTCGGC 270150 Query 59968 CATCATTT-GCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGC 60026 || |||| | | | || |||| || || || ||| || || ||||||||| ||| Sbjct 270149 CA--ATTTCGGAGAGCGCATCATTGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGC 270092 Query 60027 TCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCC 60086 ||| | ||||||||||| || ||||| || || |||||||| |||| |||||| Sbjct 270091 AGCTTCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGACTGACCTTCTCC 270032 Query 60087 AACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCA 60146 |||||||| || ||||| ||||||||||| || || ||||| ||| | | | | || Sbjct 270031 AACGAGCTTATCTCCCGAGACGAGGGCCTTCACTGCGACTTTGCCGTGCTGATGT-TCCA 269973 Query 60147 -CACCTATTGGAAAAATGCCCTTCCAAGGATATTCACAAGATTGTTC-AGTGGGCTTGTG 60204 ||| | || | | || | || || |||| | | || | || Sbjct 269972 GCACTTGGTGCAGCGACCCCGCCGCGAGCGCATCATTGAGATCATCCGAGATGCAGTGGC 269913 Query 60205 AAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTG 60264 | || | || |||||| |||| || || || || || ||||| || ||| | | Sbjct 269912 CATTGAACAG-GAGTTCCTCACCGATGCCCTGCCCGTGAACCTCATCGGCATGAA---TT 269857 Query 60265 GAGA---AATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAG 60321 | || ||| |||||||||| |||| || ||||| ||| | ||| | || || | Sbjct 269856 GCGATCTGATGTCGCAGTACATCGAGTTCGTGGCGGATCGCTTGCTGGTGGAATTGGGCG 269797 Query 60322 AAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAG 60381 || || ||| ||| ||||| ||| ||| ||||||| |||||| |||| | Sbjct 269796 TCGGCAAGATCTACAATACGAAGAACCCCTTCAACTTCATGGAGATGATCTCGCTGGACG 269737 Query 60382 GGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 | ||||||||||||||||||||| ||| || || || Sbjct 269736 GCAAGACCAACTTCTTTGAGAAGAAGGTGGGCGAGTA 269700 >seq1178 Length=17935 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 53836 ATGGGGAACGATGCGGCGATCGTCCAGGCCGCCCGCGTTTCTTACGGGGCCGGAACCAAG 53895 |||||| ||||| | || || || ||||| || |||||||| ||||| || ||| Sbjct 11893 ATGGGGGACGATTCCGCCATTGTGCAGGCAGCACGCGTTTCCTACGGCCGGGGCACCCGC 11952 Query 53896 TCGGTCAGCGACGAT--CGGGCTCTGATCCGCTATCTCATGCGCCACAAGCACACGACGC 53953 ||| || ||| |||||| ||||||||| || ||||| ||| || | | | Sbjct 11953 AAGGTTTCTGAAGATGCCGGGCT--GATCCGCTACCTGATGCGGCACCGCCATTCCTCAC 12010 Query 53954 CGTTTGAGATGGTCGAATTCAAGTTTCACGTGCGCGCGCCCATCTACGTGGCGCGTCAGT 54013 ||||||||||| || ||||||||||||| |||||||| | | || || |||| Sbjct 12011 CGTTTGAGATGTGTGAGATCAAGTTTCACGTCAAACTGCCCATCTTCATTGCCCGGCAGT 12070 Query 54014 GGCTCCGTCACCGGACTGCGTCCGTCAACGA 54044 || | || ||||| | || ||| ||||| Sbjct 12071 GGATTCGCCACCGTATGGCCAGCGTGAACGA 12101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548485491341520