Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5325 185 1e-41 seq5134 179 4e-40 seq5516 147 2e-30 >seq5325 Length=269097 Score = 185 bits (204), Expect = 1e-41 Identities = 315/454 (69%), Gaps = 2/454 (0%) Strand=Plus/Plus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || |||||||| ||||| || || || ||||| | |||||| | || || | || || Sbjct 224217 CCGGTTCCGATGCCCTCGGCTCCGTTGATCAGCACCATCGGTATGATGGGCAAATACCAC 224276 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 |||||| | || | | || |||||| ||| | |||| || || ||| ||| Sbjct 224277 AGAGGCTCGATCTTCTGGCCATCGTCCACCTGGTAGTCCAGCAGCGGATCGTCCAGGGGA 224336 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | || ||| || || | | |||||||||||||||||| ||| || | | Sbjct 224337 TGAAAGATGAGTCGCGTTAGGGGAGACATTAGAGTGAAAATGTAACGAGCGCTGGCGGAA 224396 Query 117332 TCCTTGCCACCAG-CAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390 || ||||| || | |||| || |||||||| || || | |||||||| || || | || Sbjct 224397 TCTTTGCCGCCCGTCAAG-CGAGTACCGAACTGACCGCGCGGCTCCAGCAGATTAATATT 224455 Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACC 117450 |||||||||||||||||| || |||| || || || || || || ||||||| Sbjct 224456 GTTGGCGCCCACAAAGTTCTGGGCCAGATTAACGATGGTCATCTGCAGCGAAACCTCACC 224515 Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGA 117510 || || || |||| | ||| ||||| | |||| |||||| |||||||||| ||| Sbjct 224516 GTGATGGTAGGCCGACATCTCGGCCACCGAACCCGACAGCTGGGCCACCTTCACCTCTCG 224575 Query 117511 CGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 | | |||| |||||| ||||| | |||||||||||||||| ||||||| ||| || Sbjct 224576 CTTGTCGTTCCTCTTGAAGCAGGTGAACATCACCTTGCGCTGACCCGGCTTCAAACCGTC 224635 Query 117571 CGCCACGTGAGGGATCGAACGCTTGATGTCCTCA 117604 | ||| || || || |||| | ||||| || Sbjct 224636 CACCAGACTGGGAATGGAGCGCTCGTTGTCCGCA 224669 Score = 174 bits (192), Expect = 2e-38 Identities = 311/452 (69%), Gaps = 4/452 (1%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 ||||| ||||||||||| || ||||||| ||| | |||||| | || || || || Sbjct 224217 CCGGTTCCGATGCCCTCGGCTCCGTTGATCAGCACCATCGGTATGATGGGCAAATACCAC 224276 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 ||||| | || || || || |||| | ||| | || | | || ||| ||| Sbjct 224277 AGAGGCTCGATCTTCTGGCCATCGTCCACCTGGTAGTCCAGCAGCGGATCGTCCAGGGGA 224336 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | || || |||| || | ||| || | ||||| ||||| || | |||||| | | Sbjct 224337 TGAAAGATGAGTCGCGTTAGGGGAGACATTAGAGTGAAAATGTAACGAGCGCTGGCGGAA 224396 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 || ||||| || | || || || || ||||| || ||||| || || || | ||| Sbjct 224397 TCTTTGCCGCCCGTCAAGCGAGTACCGAACTGACCGCGCGGCTCCAGCAGATTAATATTG 224456 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 ||||||||||| || ||||| |||| ||| || || || |||||| | |||||| Sbjct 224457 TTGGCGCCCACAAAGTTCTGGGCCAGATTAACGATGGTCATCTGCAGCGAAACCTCACCG 224516 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCA--TGTCCG 152233 || || || |||| | ||| || | | |||| || ||| |||||||||| | || Sbjct 224517 TGATGGTAGGCCGACATCTCGGCCACCGAACCCGACAGCTGGGCCACCTTCACCTCTCGC 224576 Query 152234 TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGT 152293 | ||| |||| |||||| |||| | | |||||||||||||| || |||||||||| Sbjct 224577 TTGTC--GTTCCTCTTGAAGCAGGTGAACATCACCTTGCGCTGACCCGGCTTCAAACCGT 224634 Query 152294 CCACCACGTGAGGAATCGAACGCTTGATGTCC 152325 |||||| ||||| || |||| | ||||| Sbjct 224635 CCACCAGACTGGGAATGGAGCGCTCGTTGTCC 224666 >seq5134 Length=897107 Score = 179 bits (198), Expect = 4e-40 Identities = 466/706 (66%), Gaps = 16/706 (2%) Strand=Plus/Minus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329 ||||| || || || |||| || || || ||||| ||||||| || ||| |||| Sbjct 540793 TACTTCACCCATGCGTCGCCCACACTTTTTGCCGCTGCCACGAATCGGCCGCAGCTGTCC 540734 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 || ||||| | | |||| || ||||| ||||| ||||| | | || | | || Sbjct 540733 TCGTGTTTCCTCCTCACCATGACGGCCGACTCCATCGAGGGCATTTTCAAGTCCGTGGAG 540674 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG------TATCCACTGCTCGAAC 53443 |||| ||| ||||| |||| | | || || ||||| | |||||||| Sbjct 540673 CAGTGCGCCATGATCTCGAAGTCGGCTGGCGGCATCGGGCTAAATGTCCACTGCA----- 540619 Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503 |||| ||||| ||||| | || || ||||||||| | || |||| |||| || Sbjct 540618 -TCCGGGCGAAGGGCACCTCGATTTGCGGCACGAACGGCACCTCCAATGGCCTCGTTCCC 540560 Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAG 53563 ||||| | ||||||||||| ||| || || || | ||||| || || ||||| Sbjct 540559 ATGCTGAGGGTCTTCAACAATGTGGCACGTTATGTGGATCAGGGCGGCGGCAAGCGTCCC 540500 Query 53564 GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG 53623 || | || ||||| ||||| ||||| |||||| | ||| | | ||||| || || ||| Sbjct 540499 GGCGCCTTTGCCATTTACCTGGAGCCCTGGCACTCGGACGTCTTTGAGTTCCTGGAACTG 540440 Query 53624 CGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGAT 53682 ||| || | || |||| ||| ||| || ||||| ||| || |||||||| Sbjct 540439 AAGAAGAACACCGGCAAGGAGGAGAACCGCGCCCGCGATCTGTTCTAC-GCCCTGTGGAT 540381 Query 53683 TCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAA 53742 || || ||||| ||| | || ||| | | || |||| || |||||||| | Sbjct 540380 ACCCGATCTCTTTATGAAGCGCGTCGAGGCCAATGGCGATTGGTCGCTCATGTGCCCCCA 540321 Query 53743 CGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTA 53802 | | ||||||||||| || | ||| | || || ||||| | | |||| || ||| Sbjct 540320 CAAATGCCCCGGCCTTCACGATGTGTGGGGCGATGAGTTCGAAAGGTTGTACGAGAAGTA 540261 Query 53803 CGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCT 53862 || |||| || ||| | ||| ||||| | | ||| || ||| | Sbjct 540260 CGAGCAAGAGGGTCGTGCCAACCGAACGGTGAAGGCTCAGTCCCTTTGGTTCGCCATCAT 540201 Query 53863 CAAGAGCCAGGTGGAGAC-GGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGA 53921 || |||||||| || |||||| || |||||| | ||||||| | |||| || Sbjct 540200 TGAGGCTCAGGTGGAAACTGGGAAC-CCCTACATGCTGTTCAAGGATGCCTGCAACCGGA 540142 Query 53922 AGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967 ||||||||||| |||| ||||| |||||| | |||||||| || Sbjct 540141 AGAGCAACCAGCAGAATGTCGGCACCATCAAGTGCAGCAACTTGTG 540096 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 || ||||||||||| || || || ||||| || || || || |||||||| ||||||||| Sbjct 539602 CGGAACTCCCTGCTTGTCGCTCCCATGCCCACGGCCTCTACTGCTCAGATAATGGGCAAC 539543 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 ||||| | |||||||| ||||| || || || ||| Sbjct 539542 AACGAATCCTTCGAGCCCTACACCACAAATATTTAC 539507 >seq5516 Length=367667 Score = 147 bits (162), Expect = 2e-30 Identities = 532/816 (65%), Gaps = 21/816 (3%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || ||| ||| ||||| ||||||||||| || |||| |||||| ||||||| Sbjct 269700 TACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCCATG 269759 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATA--GGCTTCTCCCCAAACTGTGCCATGAGGC 74580 ||| ||| |||||||| | | ||| || | | | ||| || | ||| | || Sbjct 269760 AAGTTGAAGGGGTTCTTCGTATTGTAGATCTTGCCGACGCCC--AATTCCACCAGCAAGC 269817 Query 74581 GATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGC 74640 |||||||||| || | |||||||||| ||| | || |||||||||||| || | Sbjct 269818 GATCCGCCACGAACTCGATGTACTGCGACATCAGATCGCAATTCATGCCGATGAGGTT-C 269876 Query 74641 ACGG-CAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATT--GGACAATCT 74697 |||| ||| || ||||||| ||||| || | || | || | ||| ||| |||| Sbjct 269877 ACGGGCAGGGCATCGGTGAGGAACTC-CTGTTCAA-TGGCCACTGCATCTCGGATGATCT 269934 Query 74698 TGTGAATGTCTTTG-GAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGCAAAC 74756 ||| | | | ||| | | | | || ||| | | | | ||||||||| Sbjct 269935 CAATGATGCGCTCGCGGCGGGGTCGCTGCAC-CAAGTGCTGGAACATCAGCACGGCAAAG 269993 Query 74757 TCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATA 74816 || || ||| || |||| | || | || || || || | || || ||||| Sbjct 269994 TCGCAGTGAAGGCCCTCGTCTCGGGAGATAAGCTCGTTGGAGAAGGTCAGTCCCGGCATC 270053 Query 74817 AGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCG 74876 || || |||||||||| ||| || |||| |||| || |||||||||||||| ||| Sbjct 270054 AGACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCG 270113 Query 74877 ACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCA---TCGGAAGTCATCCAAGTC 74933 || || ||||| | | ||| | |||| || | ||| | ||||| | Sbjct 270114 ACGGCAGCGAAGGCAATGATGCGCTCTCCGAAATTGGCCGACTTGGAGGAGATCCAGGAA 270173 Query 74934 TGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTT 74993 ||||||| || || || || || || || || | || ||||| || | ||| ||| | Sbjct 270174 AGAGCCCAGTCCGCCTTGCGCTTCACAGCCGGCATCGTCTCGATGGCGTTGAACAGGTAT 270233 Query 74994 GCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGA 75053 || || | || ||| || | |||| |||| | |||| ||||||| || Sbjct 270234 TCCCGCTGGTGCGGGTCCCGGATGTATGTGTCGATCAGCACACTGTACATCTCCGAGTGC 270293 Query 75054 ATCGACTCGTTGAACGACTGGTACGC-GTAGAAAGACCGCGCCTCTGCAATCTGTACATC 75112 | ||| || ||| | | | || |||||| | || ||||| | ||||| || || Sbjct 270294 ACGTTCTCCATGG-CGATTTGGAAGCCGTAGAAGCAGCGTGCCTCCGTGATCTGAACCTC 270352 Query 75113 CTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAA 75170 || |||| || | | | ||||| | |||||||| || ||||||||||| || Sbjct 270353 CTGGCTGAAGCGCTC--GACCAGGTTCTCATTTACGATGCCATCGGAGGCGGCGAAGAAG 270410 Query 75171 GCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGG 75230 ||||| || ||| ||||||||||| || || | || || ||| || ||||| Sbjct 270411 GCCAGCACGTGCGAGATGAAGTGGCGCTCGTCATCCTTCAGGCGGTGCCAGTCGGTCAGG 270470 Query 75231 TCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA 75266 ||| | || ||| | |||||| || ||||||||| Sbjct 270471 TCCTTGGACAGATCCACCTCCTCCACTGTCCAGAAA 270506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547176785133400