Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq5503 214 1e-50 seq5134 214 1e-50 >seq5503 Length=77054 Score = 214 bits (236), Expect = 1e-50 Identities = 445/657 (68%), Gaps = 12/657 (2%) Strand=Plus/Plus Query 29812 CTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGT 29871 || |||| || || ||| ||| |||||||||| | |||| | ||| ||||| Sbjct 66266 CTGCACCTGCCGCTTGATCACCAGCTTGGGAAAGGGACGCGGCTTACGCTCCAGCTGCTC 66325 Query 29872 CTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTC 29931 ||||| || ||||| | || |||||||| || | ||| |||| | |||| ||||| || Sbjct 66326 TTTCAGGGGCTCCACATGATTTAGGTAGACATGCGTGTCGCCCATGGTGTGTACAAAGTC 66385 Query 29932 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 29991 ||| |||| ||| || || || || || ||||||| ||||| || | |||| |||||| Sbjct 66386 TCCTGGTTTTAGACCCGTCACATGGGCGATCATGTGGGTGAGCAGGGCGTAGGAGGCGAT 66445 Query 29992 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 30051 ||| ||||| || || || |||||||| | || |||||| ||||| || |||||||| Sbjct 66446 GTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCGCTGGTACAGCTGGCAGGAGAGCTC 66505 Query 30052 TCCGTCGC-TC------ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGA 30104 ||| ||| || ||||| ||||| || | ||||||||| || || ||||| Sbjct 66506 GCCG-CGCGTCTGTGAGACGTAGAACTGGGCCAGGCAGTGGCACGGCGGCAGGGCCATCT 66564 Query 30105 GGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCC 30164 | | ||| || |||||||| ||| ||||||||||||||| || || ||| Sbjct 66565 TGGGTATGTCCAGCGGATTCCAGGCCGACATGATGATGCGCCTGTCCGAGGGATTATTCT 66624 Query 30165 TGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCC--CT 30222 |||| ||| | | | ||||||| || | ||| | || ||| | || | | Sbjct 66625 TGATAGTGTCGATCACCTGGCGCAGCTGGTCGATGCCCTTGCCGCTGTAAT-TGTCGTCG 66683 Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 || || | |||||| || |||||||| | ||||||||| || |||||||| || ||||| Sbjct 66684 CAGGTGC-CGTACTCCGCCCCGAAATGACGCCACTGGAAGCCATACACCGGGCCGAGGTC 66742 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 ||| | | | | | | |||| |||||||| || || | || | ||| | || Sbjct 66743 GCCCACGGCGCGCTCCGTGTGGCCCAGCTTGTCCAGGAACTCCCGGGTGCTGTTCCCATC 66802 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 30402 |||||| | || ||| | ||| |||| || || || || ||||| Sbjct 66803 CCAGATATGAACGTTCTTGGCCTGCAGCAGCTTGGCGTCCGTCTGGCCAGCCACAAACCA 66862 Query 30403 CAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30459 ||||||||||| | || || | ||||| | |||||| || || ||||| || Sbjct 66863 GAGCAGCTCCTCGGCCACCGCGCGGAAGAAGACGCGCTTGGTGGTCAGCAGGGGGAA 66919 >seq5134 Length=897107 Score = 214 bits (236), Expect = 1e-50 Identities = 445/657 (68%), Gaps = 12/657 (2%) Strand=Plus/Minus Query 29812 CTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGT 29871 || |||| || || ||| ||| |||||||||| | |||| | ||| ||||| Sbjct 890982 CTGCACCTGCCGCTTGATCACCAGCTTGGGAAAGGGACGCGGCTTACGCTCCAGCTGCTC 890923 Query 29872 CTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTC 29931 ||||| || ||||| | || |||||||| || | ||| |||| | |||| ||||| || Sbjct 890922 TTTCAGGGGCTCCACATGATTTAGGTAGACATGCGTGTCGCCCATGGTGTGTACAAAGTC 890863 Query 29932 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 29991 ||| |||| ||| || || || || || ||||||| ||||| || | |||| |||||| Sbjct 890862 TCCTGGTTTTAGACCCGTCACATGGGCGATCATGTGGGTGAGCAGGGCGTAGGAGGCGAT 890803 Query 29992 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 30051 ||| ||||| || || || |||||||| | || |||||| ||||| || |||||||| Sbjct 890802 GTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCGCTGGTACAGCTGGCAGGAGAGCTC 890743 Query 30052 TCCGTCGC-TC------ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGA 30104 ||| ||| || ||||| ||||| || | ||||||||| || || ||||| Sbjct 890742 GCCG-CGCGTCTGTGAGACGTAGAACTGGGCCAGGCAGTGGCACGGCGGCAGGGCCATCT 890684 Query 30105 GGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCC 30164 | | ||| || |||||||| ||| ||||||||||||||| || || ||| Sbjct 890683 TGGGTATGTCCAGCGGATTCCAGGCCGACATGATGATGCGCCTGTCCGAGGGATTATTCT 890624 Query 30165 TGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCC--CT 30222 |||| ||| | | | ||||||| || | ||| | || ||| | || | | Sbjct 890623 TGATAGTGTCGATCACCTGGCGCAGCTGGTCGATGCCCTTGCCGCTGTAAT-TGTCGTCG 890565 Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 || || | |||||| || |||||||| | ||||||||| || |||||||| || ||||| Sbjct 890564 CAGGTGC-CGTACTCCGCCCCGAAATGACGCCACTGGAAGCCATACACCGGGCCGAGGTC 890506 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 ||| | | | | | | |||| |||||||| || || | || | ||| | || Sbjct 890505 GCCCACGGCGCGCTCCGTGTGGCCCAGCTTGTCCAGGAACTCCCGGGTGCTGTTCCCATC 890446 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 30402 |||||| | || ||| | ||| |||| || || || || ||||| Sbjct 890445 CCAGATATGAACGTTCTTGGCCTGCAGCAGCTTGGCGTCCGTCTGGCCAGCCACAAACCA 890386 Query 30403 CAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30459 ||||||||||| | || || | ||||| | |||||| || || ||||| || Sbjct 890385 GAGCAGCTCCTCGGCCACCGCGCGGAAGAAGACGCGCTTGGTGGTCAGCAGGGGGAA 890329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406282010711436