Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq5136 140 2e-28 seq4121 113 3e-20 seq3746 93.3 3e-14 >seq5136 Length=173398 Score = 140 bits (154), Expect = 2e-28 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||||| || ||||| |||||||| ||||| ||||| || ||| Sbjct 116356 AGACGGAGGACCAAATGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGC 116415 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||| || || || ||||| || |||||||| || || || || | ||||||| Sbjct 116416 CCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCCTCC 116475 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | ||| || | ||||||||| ||| ||||||| ||| Sbjct 116476 TTGTCTTGGAT-TTTGGCTTTTACATTCTCAATTGTGTCGGATGGCTCGACTTCCAGGGT 116534 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | ||| |||||||| |||||||| Sbjct 116535 GATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 116573 Score = 123 bits (136), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || ||||| || ||| |||||| |||||||| || || ||||| || || Sbjct 116584 AGACGGAGGACTAAATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGT 116643 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || |||||||| ||||| || || || ||||| || || || || | ||||||| Sbjct 116644 CCGTCCTCCAGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCC 116703 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | || ||| | ||| |||||| ||| || |||| ||| Sbjct 116704 TTGTCCTGGAT-TTTAGCCTTGACGTTTTCAATGGTGTCTGAAGGCTCAACCTCCAGGGT 116762 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||| || || | || |||||||| ||||||||| Sbjct 116763 GATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 116802 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||||||||| || |||||| || ||||| ||||| || Sbjct 115891 CCTCCACGAAGACGGAGGACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGGAC 115950 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || |||||||| || || || || | |||||| || || || || Sbjct 115951 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCAGCGAAGATGAGACGCTGCTGATCTGGAGGG 116010 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||||||||||| |||||| |||| || ||||| ||| ||| Sbjct 116011 ATTCCCTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCGGATGGCTCGACT 116070 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || ||||| || || ||||| || |||||||| Sbjct 116071 TCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 116117 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||||||||||||| | ||| ||||| || ||||| || || ||| Sbjct 115435 CCACCACGAAGACGCAACACCAAATGCAAAGTCGATTCCTTCTGGATGTTGTAGTCAGAA 115494 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || ||||| || || || || || || | |||||| || || || || Sbjct 115495 AGAGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGG 115554 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||||| ||| ||| | || || | ||| || || | ||| || Sbjct 115555 ATTCCCTCCTTGTCTTGGAT-TTTAGCCTTCACATTCTCAATCGTATCAGAGGGCTCGAC 115613 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || ||||| ||||| | || ||||| || |||||||| Sbjct 115614 CTCCAGGGTGATTGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 115661 Score = 98.7 bits (108), Expect = 6e-16 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| || ||| ||||| || ||||| || || || || || || Sbjct 116812 AGACGGAGAACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 116871 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || ||||| || || || ||||| ||||| || || | |||||| Sbjct 116872 CCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCC 116931 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || |||||| | || || | ||| || || |||||| |||| ||| Sbjct 116932 TTATCCTGGATCTTG-GCCTTCACATTCTCAATCGTATCGGAAGGCTCCACCTCCAAGGT 116990 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || || || || || |||||||| |||||||||||| Sbjct 116991 GATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATGTTG 117033 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || | |||| |||||| || ||||| || || ||||| || || | |||||| Sbjct 115225 ACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGTCCATCTTCA 115284 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || ||||| || || |||||||| || || || || | |||||||||||| | Sbjct 115285 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCTTGG 115344 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 || ||| | || || | || || || | || || |||| ||| || || || Sbjct 115345 AT-TTTAGCCTTCACATTCTCGATGGTATCAGAGGGTTCGACCTCCAGGGTGATGGTCTT 115403 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || ||||| || |||||||| Sbjct 115404 GCCAGTCAAAGTCTTCACGAATATCTGCAT 115433 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || | |||| ||| || || ||||||||||| || Sbjct 116119 CCTCCACGAAGACGGAGAACCAAGTGCAAAGTGGACTCTTTCTGGATGTTATAATCGGAC 116178 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || | |||||| |||||||| || || ||||| || || || || Sbjct 116179 AGGGTGCGTCCGTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGGG 116238 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||| || ||| ||| | || || | || || || | || || Sbjct 116239 ATTCCTTCCTTATCCTGGAT-TTTAGCCTTCACATTCTCGATGGTATCGGAGGGTTCGAC 116297 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || ||||| || || | || |||||||| |||||||| Sbjct 116298 CTCCAAGGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAGATCTGCAT 116345 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || || || |||||| || ||||||||||| || Sbjct 115663 CCACCACGAAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAATCGGAC 115722 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||| ||||| ||||| || || || ||||| ||||| || || Sbjct 115723 AGAGTACGTCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGA 115782 Query 34600 ACTCCCTCCTTGTC 34613 | ||| ||||| || Sbjct 115783 ATTCCTTCCTTATC 115796 >seq4121 Length=254077 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| |||||| | |||||| ||||| || ||||||||| ||||||||||| || Sbjct 189722 GCCTCCTCGAAGACGGAGCACCAAGTGGAGGGTTGACTCCTTTTGGATGTTATAATCGGA 189781 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || ||||| || || |||||||| || || || || Sbjct 189782 TAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 189841 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | ||| || || | || | Sbjct 189842 GATACCCTCCTTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTATCGGAGGGTTCGA 189900 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || ||||| | || ||||| || |||||||| Sbjct 189901 CCTCAAGGGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 189949 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||| | ||| |||||| || ||||| || || ||||| || || Sbjct 189960 AGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGT 190019 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || |||||||| || || || || | ||||||| Sbjct 190020 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCC 190079 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 190080 TTGTCCTGGATCTT 190093 Score = 91.5 bits (100), Expect = 9e-14 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | ||||||| |||||||| | ||| |||||| || ||||| || || | Sbjct 189037 CGCCACCACGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGG 189096 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | || || || | || || || || || ||||| || || |||||||| || || || | Sbjct 189097 ATAGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAG 189156 Query 34598 GCACTCCCTCCTTGTCTGTGATCTT 34622 | | ||||||||||||| |||||| Sbjct 189157 GGATTCCCTCCTTGTCTTGGATCTT 189181 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || || ||| |||||| || ||||||||||| || | || || Sbjct 189276 AGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTGCGT 189335 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || || || || || | |||||| || || || || | ||||||| Sbjct 189336 CCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCCCTCC 189395 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | ||| || || | ||| || || | ||| Sbjct 189396 TTGTCCTGGATC-TTGGCCTTCACATTCTCAATGGTATCGGAGGGCTCAACCTCAAGGGT 189454 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | || ||||| || |||||||| Sbjct 189455 AATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 189493 Score = 89.7 bits (98), Expect = 3e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || || ||| |||||| || ||||||||||| || | || || Sbjct 190188 AGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTGCGT 190247 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || || || || || | |||||| || || || || | ||||||| Sbjct 190248 CCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCCCTCC 190307 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | || || || | || || |||| || Sbjct 190308 TTGTCCTGGATC-TTAGCCTTGACATTCTCGATGGTATCGGAGGGTTCGACCTCCAAAGT 190366 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || || || || || ||||||||||| ||||| ||| Sbjct 190367 GATGGTCTTGCCAGTCAAAGTCTTCACAAAAATTTGCATTTTG 190409 >seq3746 Length=358675 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | |||||| || || || |||||| || ||||| || || || || || || Sbjct 174179 AGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 174238 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || | |||||| || ||||| || | |||||| Sbjct 174239 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATGCCCTCC 174298 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||||| | || || | || ||||| |||||| |||| ||| Sbjct 174299 TTGTCCTGGATCTTG-GCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGT 174357 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || ||||| | ||||||||||| || |||||| || Sbjct 174358 GATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATGGTG 174400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314707609547789