Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5566 156 4e-33 seq5136 149 5e-31 seq4121 149 5e-31 seq3746 143 2e-29 seq5134 140 3e-28 >seq5566 Length=752539 Score = 156 bits (172), Expect = 4e-33 Identities = 194/266 (73%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 135476 TGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATG 135535 |||||| | || |||| |||||| ||| || ||||| |||||||| ||| |||||||| Sbjct 126224 TGGAACTCCGCGCAACTGCAGCTGGTGCGCGAGGGCAAGATGCACGGCTTTCTGCGCATG 126165 Query 135536 TATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCA 135595 || ||||| |||||||| | || ||| | || | || | | ||||||| | | || Sbjct 126164 TACTGGGCCAAAAAGATTCTCGAGTGGACCGCCACCCCGGAACAGGCGCTGGAGTATGCG 126105 Query 135596 ATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTTGT 135655 || | || || || | ||||| | || ||||||||| | || ||||| || || || Sbjct 126104 ATTCTGTTGAACGACAAGTACAGCCTCGACGGACGCGATCCCAACGGCTATGTCGGCTGC 126045 Query 135656 ATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCAAG 135715 |||||||| ||| ||||||| ||||| || |||||||||||| | || |||||| Sbjct 126044 ATGTGGTCCATTGGCGGTGTCCACGACATGGGCTGGAAGGAGCGCGCGATATTCGGCAAG 125985 Query 135716 ATTCGCTATATGAACTATGACGGTTG 135741 | || || ||||||||| | || || Sbjct 125984 GTGCGGTACATGAACTATCAGGGCTG 125959 >seq5136 Length=173398 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| | || || || ||||| || || ||| Sbjct 116573 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCATCC 116514 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| ||||| |||||||| || || || || || ||||| Sbjct 116513 GACACAATTGAGAATGTAAAAGCCAAAATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 116454 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || ||||| || | ||||| | || |||| ||||||||| Sbjct 116453 CAGCGTTTGATCTTTGCTGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCTGATTACAAC 116394 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || ||| | |||||||| | ||| | || ||||| || Sbjct 116393 ATTCAGAAGGAATCTACCCTCCATTTGGTCCTCCGTCTCCGTGGTGGAAT 116344 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| ||||||| ||| | || || || ||||| || || ||| Sbjct 116117 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTCGAGCCATCC 116058 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || |||||||| || || || || || ||||| Sbjct 116057 GACACCATCGAGAATGTAAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGATCAG 115998 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||||||| |||| ||| | ||| | |||||||||||| Sbjct 115997 CAGCGTCTCATCTTCGCTGGCAAACAACTGGAGGACGGACGCACCCTGTCCGATTACAAC 115938 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | |||||||| | ||| | || || || || Sbjct 115937 ATCCAGAAGGAGTCTACCCTCCATTTGGTCCTCCGTCTTCGTGGAGGAAT 115888 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || ||||| | || || || || || || || || Sbjct 116802 CATGCAGATCTTTGTGAAGACCCTCACTGGCAAAACCATCACCCTGGAGGTTGAGCCTTC 116743 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | ||||| ||||| || ||||| || || || || || ||||| Sbjct 116742 AGACACCATTGAAAACGTCAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGATCA 116683 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| || || | ||||||||||||| |||| ||| | || |||| || ||||| Sbjct 116682 GCAGCGATTGATCTTCGCCGGCAAACAACTGGAGGACGGACGCACTCTTTCTGACTACAA 116623 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| || | ||||| || | ||| |||| ||||| || Sbjct 116622 CATTCAGAAGGAGTCCACACTTCATTTAGTCCTCCGTCTGCGCGGTGGTAT 116572 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || ||| |||| |||||| | || || || || || ||||| || Sbjct 115433 ATGCAGATATTCGTGAAGACTTTGACTGGCAAGACCATCACCCTGGAGGTCGAACCCTCT 115374 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || ||||| |||||||| || ||||| || || ||||| Sbjct 115373 GATACCATCGAGAATGTGAAGGCTAAAATCCAAGACAAGGAGGGCATCCCCCCAGATCAG 115314 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| || || | ||||| | ||| |||| || |||||| Sbjct 115313 CAGCGTTTGATCTTCGCCGGAAAGCAGCTTGAAGATGGACGCACCCTTTCGGACTACAAC 115254 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || || || |||||| | || | || || ||||| Sbjct 115253 ATCCAGAAGGAGTCCACTTTGCACTTGGTTCTCCGCCTCCGTGGAGGCAT 115204 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| |||||| | || |||||||| || || || || Sbjct 115889 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTTGAGCCTTCA 115830 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||| || || ||||| || || || || || Sbjct 115829 GACACCATCGAAAACGTCAAGGCTAAGATTCAGGATAAGGAAGGAATTCCCCCAGACCAG 115770 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||| ||||| | ||||| | || | |||||||| ||| Sbjct 115769 CAGCGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGACGTACTCTGTCCGATTATAAC 115710 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || |||||| | ||| | || ||||| || Sbjct 115709 ATCCAGAAGGAGTCGACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGTAT 115660 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || || | || || | || || ||||| ||| Sbjct 116345 ATGCAGATCTTTGTGAAGACCCTCACTGGAAAAACCATCACCTTGGAGGTCGAACCCTCC 116286 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || ||||| || || || ||||| || || || ||||| Sbjct 116285 GATACCATCGAGAATGTGAAGGCTAAAATCCAGGATAAGGAAGGAATCCCCCCAGATCAG 116226 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||||| ||||||||||| ||| | ||| | |||||||| ||| Sbjct 116225 CAGCGATTGATCTTTGCCGGAAAACAATTGGAGGACGGACGCACCCTGTCCGATTATAAC 116166 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || || || |||||| | ||| | || || || || Sbjct 116165 ATCCAGAAAGAGTCCACTTTGCACTTGGTTCTCCGTCTTCGTGGAGGAAT 116116 >seq4121 Length=254077 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||||||||| ||| | ||||| ||||| || ||||| ||| Sbjct 189949 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATTACCCTTGAGGTCGAACCCTCC 189890 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || || || ||||| || || || || || ||||| Sbjct 189889 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGATCAG 189830 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||||||||| || ||||||| | || | |||||||| ||| Sbjct 189829 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTATCCGATTATAAC 189770 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | || ||||| | ||| | || || ||||| Sbjct 189769 ATCCAAAAGGAGTCAACCCTCCACTTGGTGCTCCGTCTTCGAGGAGGCAT 189720 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||||||||| ||| | ||||| ||||| || || || ||| Sbjct 189493 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATTACCCTTGAGGTTGAGCCCTCC 189434 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || || || ||||| || || || || || ||||| Sbjct 189433 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATCAG 189374 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || || |||| ||| | ||| | |||||||| ||| Sbjct 189373 CAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTATAAC 189314 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || ||||| ||||| |||| |||||||| Sbjct 189313 ATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCGTCTGCGTGGTGGCAT 189264 >seq3746 Length=358675 Score = 143 bits (158), Expect = 2e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||| || ||||| ||||| || ||||||||| | || || | || ||||| || | Sbjct 174398 CCATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTT 174339 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| | || |||| ||||| || || || ||||| || ||||| || || |||| Sbjct 174338 CGGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATC 174279 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | |||||| | || | ||||||||| || |||| ||| | ||| | ||||| |||| Sbjct 174278 AGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACA 174219 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || |||||||||||| | || ||||| | || |||| ||||| || Sbjct 174218 ACATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGCGGTGGTAT 174167 >seq5134 Length=897107 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || |||||||| || ||||| || Sbjct 635707 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCTTCG 635766 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| || ||||| ||||||||||| || || || ||||| Sbjct 635767 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 635826 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || ||||||| | ||| | || || || ||| Sbjct 635827 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 635886 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| || || || ||||| |||| |||| ||||| Sbjct 635887 ATTCAGAAGGAGTCCACTTTGCACTTGGTGCTGCGCCTGCGTGGTGG 635933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434887232660160