Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq1655 100 9e-17 >seq1655 Length=1316 Score = 100 bits (110), Expect = 9e-17 Identities = 221/324 (68%), Gaps = 8/324 (2%) Strand=Plus/Plus Query 40091 CCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTG-ACGTACCGGAT 40149 ||||| || |||||| || || ||| |||||||| ||| || | || || || Sbjct 467 CCGAACGTGATGATCTGCGCCACACGGTCCGCCCCGTA-TTCACGCCGCACATAGGCTAT 525 Query 40150 GACCTCGCCGCGACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGC 40207 |||||| | || || || | || ||||||||| |||| ||| ||||||||||| || Sbjct 526 CACCTCGTCTCGCCGGTCCTGACA--GAAGTCGATATCAAAGTCAGGCATGGACACACGT 583 Query 40208 TCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGAT- 40266 || || ||||| ||||| ||||| | || | | ||| ||||| | ||| ||||| Sbjct 584 TCAGGATTCAGAAACCGTTCGAACAGCAGATTGAACGGCAGCGGATCAATGTCCGTGATG 643 Query 40267 CCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACAC 40326 | | || | ||| |||| ||||| || |||| || ||||| || || || | Sbjct 644 GTCAACGC-CCATGCGGCCAGAGAACCTGCACCCGACCCACGCCCCGGCCCCACGGGAAT 702 Query 40327 GCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCC 40386 | | | ||| |||| ||||||||| || |||| || |||||| |||||||| Sbjct 703 ATCATGCGTCTTCCCCCACTGGATGAAGTCCGCAACGATCATGAAGTAACCGGGGAAGCC 762 Query 40387 CATCTGGATGATCATGTCGATCTC 40410 ||||| | ||| || || | ||| Sbjct 763 CATCTTGGAGATAATATCCAGCTC 786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160395479632542