Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq5503 172 5e-38 seq5134 172 5e-38 >seq5503 Length=77054 Score = 172 bits (190), Expect = 5e-38 Identities = 457/693 (66%), Gaps = 24/693 (3%) Strand=Plus/Plus Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTC 6559 |||| ||| || || || |||| || | |||||| || |||| | || || Sbjct 66288 AGCTTGGGAAAGGGACGCGGCTTACGCTCCAGCTGCTCTTTCAGGGGCTCCACATGATTT 66347 Query 6560 AGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACA 6619 ||||||| ||||| || |||| || || || | || || || | ||| ||| Sbjct 66348 AGGTAGACATGCGTGTCGCCCATGGTGTGTACAAAGTCTCCTGGTTTTAGACCCGTCACA 66407 Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || |||||||||| |||||||| ||||| || |||||||| ||||| || | ||| Sbjct 66408 TGGGCGATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGCACGCCCAGGCCC 66467 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC------GACGTAG 6733 ||||| | || || || ||||||||||| ||||| || || ||||||| Sbjct 66468 ATGTCGGCGCTCCGCTGGTACAGCTGGCAGGAGAGCTCGCCGCGCGTCTGTGAGACGTAG 66527 Query 6734 AATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCAC 6793 || ||| ||| ||||||||| || || |||||| || | ||| ||| ||||| Sbjct 66528 AACTGGGCCAGGCAGTGGCACGGCGGCAGGGCCATCTTGGGTATGTCCAGCGGATTCCAG 66587 Query 6794 GCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC 6853 || |||| | ||| | ||||| || || ||| | ||||||||||| | || Sbjct 66588 GCCGACATGATGATGCGCCTGTCCGAGGGATTATTCTTGATAGTGTCGATCACCTGGCGC 66647 Query 6854 AGCTGGTCCGCTCCCTGTCCCG----AATAGTCCGCTTCGCTCCCCCGATACTCCGCCCC 6909 |||||||| |||| | ||| ||| ||| | | | || ||||||||||| Sbjct 66648 AGCTGGTCGATGCCCT-TGCCGCTGTAATTGTCGTCGCAGGTGCCG---TACTCCGCCCC 66703 Query 6910 AAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAA 6969 || || | ||||||||| || || |||||||| | ||||||| | | || | | Sbjct 66704 GAAATGACGCCACTGGAAGCCATACACCGGGCCGAGGTCGCCCACGGCGCGCTCCGTGTG 66763 Query 6970 CCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGA 7029 ||| |||||||||| || || || | | || | |||||||| | || | || Sbjct 66764 GCCCAGCTTGTCCAGGAACTCCCGGGTGCTGTTCCCATCCCAGATATGAACGTTCTTGGC 66823 Query 7030 CGAGAGCTCCTTGGTGTTCG--TGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACG 7087 | ||| ||||| || || ||||| | ||| ||||| |||||||||||| |||| Sbjct 66824 CTGCAGCAGCTTGGCGTCCGTCTGGCCAGC--CACAAACCAGAGCAGCTCCTCGGCCACC 66881 Query 7088 CCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA---ATTCGCCCCGAAGGTTGTAT 7144 | || | || || || || |||||||| || | ||||| || | || | | Sbjct 66882 GCGCGGAAGAAGACGCGCTTGGTGGTCAGCAGGGGGAAGGATTCG---CGCATGTCGAAG 66938 Query 7145 CGGGCCTGTGTGCCGAACACGGAGAGGGTCCCC 7177 || ||| ||||||||| ||| || || ||| Sbjct 66939 CGCATCTGGCTGCCGAACAGGGACAGCGTGCCC 66971 Score = 172 bits (190), Expect = 5e-38 Identities = 457/693 (66%), Gaps = 24/693 (3%) Strand=Plus/Minus Query 34168 GGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGGGGCGAAT---TTCC 34224 ||| || || ||| ||||||||| ||| || | | || | || ||||| | || Sbjct 66971 GGGCACGCTGTCCCTGTTCGGCAGCCAGATGCGCTTCGACATGCG---CGAATCCTTCCC 66915 Query 34225 GCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGT 34284 |||||||| || || || || | || | |||| |||||||||||| ||||| || Sbjct 66914 CCTGCTGACCACCAAGCGCGTCTTCTTCCGCGCGGTGGCCGAGGAGCTGCTCTGGTTTGT 66855 Query 34285 GAGGGGGGCCA--CGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 | | ||||| || || ||||| ||| | || | || | |||||||| | Sbjct 66854 G--GCTGGCCAGACGGACGCCAAGCTGCTGCAGGCCAAGAACGTTCATATCTGGGATGGG 66797 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTG 34402 || | | || || || |||||||||| ||| | | || | | ||||||| | Sbjct 66796 AACAGCACCCGGGAGTTCCTGGACAAGCTGGGCCACACGGAGCGCGCCGTGGGCGACCTC 66737 Query 34403 GGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCG 34462 |||||||| || || ||||||||| | || || ||||||||||| || | | | Sbjct 66736 GGCCCGGTGTATGGCTTCCAGTGGCGTCATTTCGGGGCGGAGTA---CGGCACCTGCGAC 66680 Query 34463 GACTATT----CGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCG 34518 ||| ||| ||| | |||| |||||||||| | ||||||||||| | ||| Sbjct 66679 GACAATTACAGCGGCA-AGGGCATCGACCAGCTGCGCCAGGTGATCGACACTATCAAGAA 66621 Query 34519 GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGAT 34578 || || ||||| | ||| | |||| || ||||| ||| ||| | || ||| Sbjct 66620 TAATCCCTCGGACAGGCGCATCATCATGTCGGCCTGGAATCCGCTGGACATACCCAAGAT 66561 Query 34579 GGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC------GCGAATGGGGAGCT 34632 ||| || || ||||||||| ||| ||| ||||||||| || || ||||| Sbjct 66560 GGCCCTGCCGCCGTGCCACTGCCTGGCCCAGTTCTACGTCTCACAGACGCGCGGCGAGCT 66501 Query 34633 GTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGC 34692 ||||||||||| || || || | |||||||| | || ||||| |||||||| || Sbjct 66500 CTCCTGCCAGCTGTACCAGCGGAGCGCCGACATGGGCCTGGGCGTGCCCTTCAACATCGC 66441 Query 34693 TAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCT 34752 ||||| |||||||| |||||||||| ||||| ||| | || || || | Sbjct 66440 CTCCTACGCCCTGCTCACCCACATGATCGCCCATGTGACGGGTCTAAAACCAGGAGACTT 66381 Query 34753 GGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCA 34812 || || || |||| || ||||| ||||||| || || | |||| || || Sbjct 66380 TGTACACACCATGGGCGACACGCATGTCTACCTAAATCATGTGGAGCCCCTGAAAGAGCA 66321 Query 34813 GCTGCAACGAGAGCCCCGACCGTTCCCCCAGCT 34845 |||| | || |||| || || || ||| |||| Sbjct 66320 GCTGGAGCGTAAGCCGCGTCCCTTTCCCAAGCT 66288 >seq5134 Length=897107 Score = 172 bits (190), Expect = 5e-38 Identities = 457/693 (66%), Gaps = 24/693 (3%) Strand=Plus/Plus Query 34168 GGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGGGGCGAAT---TTCC 34224 ||| || || ||| ||||||||| ||| || | | || | || ||||| | || Sbjct 890277 GGGCACGCTGTCCCTGTTCGGCAGCCAGATGCGCTTCGACATGCG---CGAATCCTTCCC 890333 Query 34225 GCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGT 34284 |||||||| || || || || | || | |||| |||||||||||| ||||| || Sbjct 890334 CCTGCTGACCACCAAGCGCGTCTTCTTCCGCGCGGTGGCCGAGGAGCTGCTCTGGTTTGT 890393 Query 34285 GAGGGGGGCCA--CGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 | | ||||| || || ||||| ||| | || | || | |||||||| | Sbjct 890394 G--GCTGGCCAGACGGACGCCAAGCTGCTGCAGGCCAAGAACGTTCATATCTGGGATGGG 890451 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTG 34402 || | | || || || |||||||||| ||| | | || | | ||||||| | Sbjct 890452 AACAGCACCCGGGAGTTCCTGGACAAGCTGGGCCACACGGAGCGCGCCGTGGGCGACCTC 890511 Query 34403 GGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCG 34462 |||||||| || || ||||||||| | || || ||||||||||| || | | | Sbjct 890512 GGCCCGGTGTATGGCTTCCAGTGGCGTCATTTCGGGGCGGAGTA---CGGCACCTGCGAC 890568 Query 34463 GACTATT----CGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCG 34518 ||| ||| ||| | |||| |||||||||| | ||||||||||| | ||| Sbjct 890569 GACAATTACAGCGGCA-AGGGCATCGACCAGCTGCGCCAGGTGATCGACACTATCAAGAA 890627 Query 34519 GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGAT 34578 || || ||||| | ||| | |||| || ||||| ||| ||| | || ||| Sbjct 890628 TAATCCCTCGGACAGGCGCATCATCATGTCGGCCTGGAATCCGCTGGACATACCCAAGAT 890687 Query 34579 GGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC------GCGAATGGGGAGCT 34632 ||| || || ||||||||| ||| ||| ||||||||| || || ||||| Sbjct 890688 GGCCCTGCCGCCGTGCCACTGCCTGGCCCAGTTCTACGTCTCACAGACGCGCGGCGAGCT 890747 Query 34633 GTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGC 34692 ||||||||||| || || || | |||||||| | || ||||| |||||||| || Sbjct 890748 CTCCTGCCAGCTGTACCAGCGGAGCGCCGACATGGGCCTGGGCGTGCCCTTCAACATCGC 890807 Query 34693 TAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCT 34752 ||||| |||||||| |||||||||| ||||| ||| | || || || | Sbjct 890808 CTCCTACGCCCTGCTCACCCACATGATCGCCCATGTGACGGGTCTAAAACCAGGAGACTT 890867 Query 34753 GGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCA 34812 || || || |||| || ||||| ||||||| || || | |||| || || Sbjct 890868 TGTACACACCATGGGCGACACGCATGTCTACCTAAATCATGTGGAGCCCCTGAAAGAGCA 890927 Query 34813 GCTGCAACGAGAGCCCCGACCGTTCCCCCAGCT 34845 |||| | || |||| || || || ||| |||| Sbjct 890928 GCTGGAGCGTAAGCCGCGTCCCTTTCCCAAGCT 890960 Score = 172 bits (190), Expect = 5e-38 Identities = 457/693 (66%), Gaps = 24/693 (3%) Strand=Plus/Minus Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTC 6559 |||| ||| || || || |||| || | |||||| || |||| | || || Sbjct 890960 AGCTTGGGAAAGGGACGCGGCTTACGCTCCAGCTGCTCTTTCAGGGGCTCCACATGATTT 890901 Query 6560 AGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACA 6619 ||||||| ||||| || |||| || || || | || || || | ||| ||| Sbjct 890900 AGGTAGACATGCGTGTCGCCCATGGTGTGTACAAAGTCTCCTGGTTTTAGACCCGTCACA 890841 Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || |||||||||| |||||||| ||||| || |||||||| ||||| || | ||| Sbjct 890840 TGGGCGATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGCACGCCCAGGCCC 890781 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC------GACGTAG 6733 ||||| | || || || ||||||||||| ||||| || || ||||||| Sbjct 890780 ATGTCGGCGCTCCGCTGGTACAGCTGGCAGGAGAGCTCGCCGCGCGTCTGTGAGACGTAG 890721 Query 6734 AATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCAC 6793 || ||| ||| ||||||||| || || |||||| || | ||| ||| ||||| Sbjct 890720 AACTGGGCCAGGCAGTGGCACGGCGGCAGGGCCATCTTGGGTATGTCCAGCGGATTCCAG 890661 Query 6794 GCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC 6853 || |||| | ||| | ||||| || || ||| | ||||||||||| | || Sbjct 890660 GCCGACATGATGATGCGCCTGTCCGAGGGATTATTCTTGATAGTGTCGATCACCTGGCGC 890601 Query 6854 AGCTGGTCCGCTCCCTGTCCCG----AATAGTCCGCTTCGCTCCCCCGATACTCCGCCCC 6909 |||||||| |||| | ||| ||| ||| | | | || ||||||||||| Sbjct 890600 AGCTGGTCGATGCCCT-TGCCGCTGTAATTGTCGTCGCAGGTGCCG---TACTCCGCCCC 890545 Query 6910 AAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAA 6969 || || | ||||||||| || || |||||||| | ||||||| | | || | | Sbjct 890544 GAAATGACGCCACTGGAAGCCATACACCGGGCCGAGGTCGCCCACGGCGCGCTCCGTGTG 890485 Query 6970 CCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGA 7029 ||| |||||||||| || || || | | || | |||||||| | || | || Sbjct 890484 GCCCAGCTTGTCCAGGAACTCCCGGGTGCTGTTCCCATCCCAGATATGAACGTTCTTGGC 890425 Query 7030 CGAGAGCTCCTTGGTGTTCG--TGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACG 7087 | ||| ||||| || || ||||| | ||| ||||| |||||||||||| |||| Sbjct 890424 CTGCAGCAGCTTGGCGTCCGTCTGGCCAGC--CACAAACCAGAGCAGCTCCTCGGCCACC 890367 Query 7088 CCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA---ATTCGCCCCGAAGGTTGTAT 7144 | || | || || || || |||||||| || | ||||| || | || | | Sbjct 890366 GCGCGGAAGAAGACGCGCTTGGTGGTCAGCAGGGGGAAGGATTCG---CGCATGTCGAAG 890310 Query 7145 CGGGCCTGTGTGCCGAACACGGAGAGGGTCCCC 7177 || ||| ||||||||| ||| || || ||| Sbjct 890309 CGCATCTGGCTGCCGAACAGGGACAGCGTGCCC 890277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448230276395760