Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq5136 131 1e-25 seq4121 104 2e-17 >seq5136 Length=173398 Score = 131 bits (144), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || |||||||| || || ||||| ||| || || | || |||||| | | Sbjct 116346 AATGCAGATCTTTGTGAAGACCCTCACTGGAAAAACCATCACCTTGGAGGTCGAACCCTC 116287 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | || | ||| || || ||||| || || ||||| | || || Sbjct 116286 CGATACCATCGAGAAT--GTGAAGGCTAAAATCCAGGATAAGGAAGGAATCCCCCCAGAT 116229 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || || || |||||||||||||||||||| |||| ||||| | |||||||||| Sbjct 116228 CAGCAGCGATTGATCTTTGCCGGAAAACAATTGGAGGACGGACGCACCCTGTCCGATTAT 116169 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| |||||| ||||||||| |||||| | ||| | ||||| || Sbjct 116168 AACATCCAGAAAGAGTCCACTTTGCACTTGGTTCTCCGTCTTCGTGGAGG 116119 >seq4121 Length=254077 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||||||||||||||| ||| | ||||| || || || | || |||||| | Sbjct 190408 AAAATGCAAATTTTTGTGAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTCGAACCC 190349 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 |||| | || | ||| ||||| || || ||||| || || | || | Sbjct 190348 TCCGATACCATCGAGAAT--GTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCTCCAG 190291 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || || || ||||| || |||| |||| ||||| ||||||||||| Sbjct 190290 ATCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGCACCTTGTCCGATT 190231 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 | |||||||| || ||| ||| | || ||||| ||||| ||||||| ||| Sbjct 190230 ATAACATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCGTCTGCGTGGTGGC 190178 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || || || |||||||| || |||| || | ||||| | ||||| Sbjct 189151 GATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGACGCACTCTATCCGAC 189092 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 ||||||||||| || ||| |||||||||||||| ||||| ||||||| |||| Sbjct 189091 TACAACATCCAGAAGGAGTCTACTTTGCATTTGGTCCTGCGTCTGCGTGGTGGCG 189037 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | || || || ||||| || |||| |||| ||||| |||||||||| Sbjct 189379 GATCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGCACCTTGTCCGAT 189320 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 || |||||||| || ||| ||| | || ||||| ||||| ||||||| ||| Sbjct 189319 TATAACATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCGTCTGCGTGGTGGC 189266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355837535560491