Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5134 181 2e-40 seq4121 176 1e-38 seq5136 168 2e-36 seq3746 140 8e-28 >seq5134 Length=897107 Score = 181 bits (200), Expect = 2e-40 Identities = 171/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| | ||||||||| || || |||||||| || | ||||| | |||||| Sbjct 635918 AGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCT 635859 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || || || ||||||| |||||| |||||| Sbjct 635858 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCC 635799 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||| || |||||||| || || || ||| ||||| |||||||| ||| Sbjct 635798 TGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGAGTGATGGTC 635739 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATG 211120 || |||||||| ||||| || || | |||||| || || Sbjct 635738 TTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGTG 635701 >seq4121 Length=254077 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||| |||||||| || |||||||||||||| | | ||| | ||| || Sbjct 189282 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTGCGTCCGTCC 189341 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || || || || || ||||| | ||| ||||||||| Sbjct 189342 TCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCC 189401 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||| || ||| |||||||| || || || ||| Sbjct 189402 TGGATCTTGGCCTTCACATTCTCAATGGTATCGGAGGGCTCAACCTCAAGGGTAATGGTC 189461 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || |||||||| || || | |||||| Sbjct 189462 TTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 189493 Score = 176 bits (194), Expect = 1e-38 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||| |||||||| || |||||||||||||| | | ||| | ||| || Sbjct 190194 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTGCGTCCGTCC 190253 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || || || || || ||||| | ||| ||||||||| Sbjct 190254 TCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCC 190313 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||| || ||| ||| ||||| | |||||| ||| Sbjct 190314 TGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGGTTCGACCTCCAAAGTGATGGTC 190373 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || | |||||| ||||| | |||||||| Sbjct 190374 TTGCCAGTCAAAGTCTTCACAAAAATTTGCATTTT 190408 Score = 174 bits (192), Expect = 4e-38 Identities = 171/221 (77%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | ||| || || ||||| ||||||||||||||||| | || || Sbjct 189729 CGAAGACGGAGCACCAAGTGGAGGGTTGACTCCTTTTGGATGTTATAATCGGATAGAGTG 189788 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||||||||||||||||||| |||||||| | || || || || || || | || Sbjct 189789 CGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATACCC 189848 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| |||||||| || ||||| || ||| ||| ||||| || Sbjct 189849 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGGAGGGTTCGACCTCAAGG 189908 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || |||||||| || |||||||| || || | |||||| Sbjct 189909 GTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 189949 Score = 168 bits (186), Expect = 2e-36 Identities = 156/198 (79%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| ||||| || |||||||| || || | || || | |||||| |||||||||||||| Sbjct 189524 AGTAGACTCCTTCTGGATGTTGTAGTCGGATAGAGTGCGTCCATCCTCCAGCTGCTTGCC 189583 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 ||||| || || || || || || || || | ||| ||||||||||||||||| || Sbjct 189584 GGCGAAAATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTT 189643 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 ||||||||||||||| ||||| ||||||||||| ||||| |||||||| || | ||| Sbjct 189644 CACGTTTTCGATGGTATCAGAAGGCTCAACCTCGAGGGTGATGGTCTTTCCGGTCAAAGT 189703 Query 211097 CTTTACAAACACCTGCAT 211114 ||| || || | |||||| Sbjct 189704 CTTCACGAAGATCTGCAT 189721 Score = 163 bits (180), Expect = 7e-35 Identities = 155/198 (78%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| ||||| || |||||||| || || | ||| || | ||| || |||||||||||||| Sbjct 189980 AGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCGTCCTCCAGCTGCTTGCC 190039 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 |||||||| | || || || || ||||| | ||| ||||||||||||||||| || Sbjct 190040 GGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTT 190099 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 ||| || |||||||| |||||| ||||||||| | |||||| ||||| || || || || Sbjct 190100 CACATTCTCGATGGTATCAGAGGGTTCAACCTCCAAAGTGATGGTCTTGCCAGTCAGGGT 190159 Query 211097 CTTTACAAACACCTGCAT 211114 ||| || || | |||||| Sbjct 190160 CTTGACGAAGATCTGCAT 190177 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || | ||| ||||| || |||||||| || || | || || | |||||| Sbjct 189054 AGGACCAAATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGATAGAGTGCGTCCATCC 189113 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| | || || || || ||||| | ||| |||||||| Sbjct 189114 TCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCT 189173 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || ||||| || || || ||||| | |||||| ||| Sbjct 189174 TGGATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAAGTGATGGTC 189233 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | |||||| Sbjct 189234 TTGCCAGTAAGAGTCTTGACGAAGATCTGCAT 189265 >seq5136 Length=173398 Score = 168 bits (186), Expect = 2e-36 Identities = 171/223 (77%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||| || ||||| || |||||||||||||| | || || Sbjct 115668 ACGAAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAATCGGACAGAGT 115727 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||| ||||| || || |||||||| | || || ||||| || |||| ||| Sbjct 115728 ACGTCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCC 115787 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||| ||||| || ||||||||||||||||| || |||||||| || Sbjct 115788 TTCCTTATCCTGAATCTTAGCCTTGACGTTTTCGATGGTGTCTGAAGGCTCAACCTCAAG 115847 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||| ||||| || || | ||||| || || | |||||| Sbjct 115848 AGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATT 115890 Score = 156 bits (172), Expect = 1e-32 Identities = 170/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || | ||| | |||||||||||| |||||||||||||| | || Sbjct 116121 TCCACGAAGACGGAGAACCAAGTGCAAAGTGGACTCTTTCTGGATGTTATAATCGGACAG 116180 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||| || |||| || || || || ||||| | || || || || || || | Sbjct 116181 GGTGCGTCCGTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGGGAT 116240 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||||||| |||||||| || ||||| || |||||||| || ||| ||| ||||| Sbjct 116241 TCCTTCCTTATCCTGGATTTTAGCCTTCACATTCTCGATGGTATCGGAGGGTTCGACCTC 116300 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | ||||| || ||||| ||||| ||||| ||||| | ||||||| Sbjct 116301 CAAGGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAGATCTGCATT 116346 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||| |||||||| || || ||||| || || | ||| || | ||| || Sbjct 116590 AGGACTAAATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGTCCGTCC 116649 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| || ||||| |||||||| | || || || || || |||| ||| ||||||||| Sbjct 116650 TCCAGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCC 116709 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || |||||||| |||||||| || |||||||| || ||||| || Sbjct 116710 TGGATTTTAGCCTTGACGTTTTCAATGGTGTCTGAAGGCTCAACCTCCAGGGTGATGGTT 116769 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | |||||| Sbjct 116770 TTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 116801 Score = 150 bits (166), Expect = 4e-31 Identities = 169/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | ||||| | || || || ||||| || |||||||| ||||| | || Sbjct 115893 TCCACGAAGACGGAGGACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGGACAG 115952 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||| || ||||| || ||||| |||||||| || || || || || ||||| | Sbjct 115953 GGTGCGTCCGTCCTCCAGTTGTTTGCCAGCGAAGATGAGACGCTGCTGATCTGGAGGGAT 116012 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| |||||||| |||||||| || || || ||||||||||| || || || || Sbjct 116013 TCCCTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCGGATGGCTCGACTTC 116072 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| |||||||| || | |||||| || || | ||||||| Sbjct 116073 CAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATT 116118 Score = 132 bits (146), Expect = 1e-25 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | ||| | ||||||||| || |||||||| || || | || || Sbjct 114985 CGAAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTA 115044 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||| || ||||| ||||| || |||||||| || || || || || || |||| ||| Sbjct 115045 CGTCCGTCCTCCAGTTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCC 115104 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| ||||||||||| || || || ||||||||||| || || || || || Sbjct 115105 TCCTTATCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCGGATGGCTCGACTTCCAGG 115164 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| || | |||||| || || | ||||| Sbjct 115165 GTGATGGTTTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 115205 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| ||||| || || |||||||| || || | ||||| | ||||||||| |||||| Sbjct 116827 TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCGAGCTGC 116886 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| | || || ||||| || |||| || ||||| ||||||||||| Sbjct 116887 TTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTATCCTGGATCTTG 116946 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||||| || || || || || || || ||||| | ||||| ||||| || || Sbjct 116947 GCCTTCACATTCTCAATCGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTC 117006 Query 211092 AGAGTCTTTACAAACACCTGCATTTT 211117 | ||||| ||||| | |||||| || Sbjct 117007 AAGGTCTTCACAAAGATCTGCATGTT 117032 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || || || || || || || ||||| ||||| | ||| || | |||||| Sbjct 116362 AGGACCAAATGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGCCCATCT 116421 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| | || || || || ||||||| ||| |||||||| Sbjct 116422 TCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCT 116481 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || || || || ||||| || || || || || ||||| ||| Sbjct 116482 TGGATTTTGGCTTTTACATTCTCAATTGTGTCGGATGGCTCGACTTCCAGGGTGATGGTC 116541 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 116542 TTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 116573 >seq3746 Length=358675 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || || | ||||| | ||| || Sbjct 174185 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCC 174244 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || || || || || | || ||||||||| Sbjct 174245 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 174304 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || ||||| | ||||| ||| Sbjct 174305 TGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTC 174364 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || ||||| | ||||| Sbjct 174365 TTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 174396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159066855576545