Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3746 102 7e-17 seq4121 89.7 4e-13 >seq3746 Length=358675 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | |||||| || || || ||| || || || || || |||| || || ||| | Sbjct 174181 GCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCC 174240 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || ||||||||||| || | ||| | || ||| || Sbjct 174241 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATGCCCTCCTT 174300 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| || |||| || | | || || | |||||| |||| ||||| Sbjct 174301 GTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGAT 174360 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || ||||| |||||||||||||| Sbjct 174361 GGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 174396 >seq4121 Length=254077 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| ||| || || || |||||||||| |||| || ||| |||| || Sbjct 190197 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAAG-GTGCGTCCGTCCTC 190255 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || ||||||||||| || | || | | ||| |||||| Sbjct 190256 CAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTG 190315 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| || | | |||||| | || || |||| ||||| | || Sbjct 190316 GATCTTAGCCTTGACATTCTCGATGGTATCGGAGGGTTCGACCTCCAAAGTGATGGTCTT 190375 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || |||| || || ||||| |||||||| || Sbjct 190376 GCCAGTCAAAGTCTTCACAAAAATTTGCATTTT 190408 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| ||| || || || |||||||||| |||| || ||| |||| || Sbjct 189285 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAAG-GTGCGTCCGTCCTC 189343 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || ||||||||||| || | || | | ||| |||||| Sbjct 189344 CAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTG 189403 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || || | || | | |||||| | ||| || || | || || | || Sbjct 189404 GATCTTGGCCTTCACATTCTCAATGGTATCGGAGGGCTCAACCTCAAGGGTAATGGTCTT 189463 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| ||||| || || || ||||| ||||| Sbjct 189464 TCCGGTCAGAGTCTTCACGAAGATCTGCAT 189493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429515587246229